| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,744,735 – 13,744,852 |
| Length | 117 |
| Max. P | 0.937992 |
| Location | 13,744,735 – 13,744,852 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 96.24 |
| Mean single sequence MFE | -23.07 |
| Consensus MFE | -22.02 |
| Energy contribution | -22.26 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.937992 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13744735 117 - 23771897 UAACUUGCAGCAUAUAAAACAAACUUUGUCGGUAUUUAAUGAAGCUGAAAAAUGCCUCGGUUUUAUUAUUUUAUUUGAACUCAGUUCCUUCUCAAUGCUGUUGCAUUUAUAGUCCGC ......(((((((........((((..(((((.(..((((((((((((........))))))))))))..)...))).))..))))........)))))))................ ( -22.49) >DroSec_CAF1 151509 117 - 1 UGACUUGCAGCAUAUAAAACAAACUUUGUCGGUAUUUAAUGAAGCUGAAAAAUGCCUCGGUUUUAUUAUUUUAUUUGAACUCAGUUUCUUCUCAAUGCUGUUGCAUUUAUACUCUGC ......((((..((((((..(((((..(((((.(..((((((((((((........))))))))))))..)...))).))..)))))........(((....)))))))))..)))) ( -24.30) >DroSim_CAF1 162641 117 - 1 UGACUUGCAGCAUAUAAAACAAACUUUGUCGGUAUUUAAUGAAGCUGAAAAAUGCCUCGGUUUUAUUAUUUUAUUUGAACUCAGUUUCUUCUCAAUGCUGUUGCAUUUAUACUCCAC ((....(((((((.......(((((..(((((.(..((((((((((((........))))))))))))..)...))).))..))))).......)))))))..))............ ( -24.04) >DroEre_CAF1 158345 117 - 1 UGACUUGCAGCAUAUAAAACAAACUUUGUCGGUAUUUAAUGAAGCUGAAAAAUGCCUCGUUUUUAUUAUUUUAUUUGAACUCAGUUUCUUCUCAAUGCUGUUGCAUUUAUACUCCGU .....((((((..(((((......))))).((((((....((((((((..........((((..((......))..)))))))))))).....))))))))))))............ ( -19.80) >DroYak_CAF1 162525 117 - 1 CAACUUGCGGCAUAUAAAACAAACUUUGUCGGUAUUUAAUGAAGCUGAAAAAUGCCUCGGUUUUAUUAUUUUAUUUGAACUCAGUUUCUUCUCAAUGCUGUUGCAUUUAUGCUCCGU ......(.((((((......(((((..(((((.(..((((((((((((........))))))))))))..)...))).))..)))))......(((((....))))))))))).).. ( -24.70) >consensus UGACUUGCAGCAUAUAAAACAAACUUUGUCGGUAUUUAAUGAAGCUGAAAAAUGCCUCGGUUUUAUUAUUUUAUUUGAACUCAGUUUCUUCUCAAUGCUGUUGCAUUUAUACUCCGC ......(((((((.......(((((..(((((.(..((((((((((((........))))))))))))..)...))).))..))))).......)))))))................ (-22.02 = -22.26 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:39 2006