Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,741,723 – 13,741,814 |
Length | 91 |
Max. P | 0.552064 |
Location | 13,741,723 – 13,741,814 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 79.78 |
Mean single sequence MFE | -11.49 |
Consensus MFE | -7.22 |
Energy contribution | -7.66 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -1.44 |
Structure conservation index | 0.63 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552064 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13741723 91 + 23771897 AUUCCGUAAACCCCCUACAUCCGACGCUCUUAGCUCUGGCAAUUUAUUUGCAAAUAUUUUUCAACAUCAAAAAUAUGUUUU-CUUUUUGCCU----------- .....(((.......)))....((.((.....)))).(((((.......(((..(((((((.......))))))))))...-....))))).----------- ( -10.84) >DroPse_CAF1 148137 94 + 1 ----UCUGAAGCUGCUGC-----CCGCUCUUGGCUUUGGCAAUUUAUUUGCAAAUAUUUUUCAACAUCAAAAAUAUGCAUUUCCUUUCCCCUGCACAUCCCUC ----...((.(.((((((-----(.((.....))...)))).......((((..(((((((.......))))))))))).............)))).)).... ( -13.00) >DroSec_CAF1 148515 91 + 1 AUUCCGUAAACCCCCUACAUCCGACGCUCUUAGCUCUGGCAAUUUAUUUGCAAAUAUUUUUCAACAUCAAAAAUAUGUUUU-CUUUUUGCCU----------- .....(((.......)))....((.((.....)))).(((((.......(((..(((((((.......))))))))))...-....))))).----------- ( -10.84) >DroSim_CAF1 159649 91 + 1 AUUCCGUAAACCCCCUACAUCCGACGCUCUUAGCUCUGGCAAUUUAUUUGCAAAUAUUUUUCAACAUCAAAAAUAUGUUUU-CUUUUUGCCU----------- .....(((.......)))....((.((.....)))).(((((.......(((..(((((((.......))))))))))...-....))))).----------- ( -10.84) >DroEre_CAF1 155141 91 + 1 AUUCCGUAAACCCCCCACAUCUGACGCUCUUAGCUCUGGCAAUUUAUUUGCAAAUAUUUUUCAACAUCAAAAAUAUGUUUU-CUUUUUGCCU----------- ......................((.((.....)))).(((((.......(((..(((((((.......))))))))))...-....))))).----------- ( -10.44) >DroPer_CAF1 149654 94 + 1 ----UCUGAAGCUGCUGC-----CCGCUCUUGGCUUUGGCAAUUUAUUUGCAAAUAUUUUUCAACAUCAAAAAUAUGCAUUUCCUUUCCCCUGCACAUCCCUC ----...((.(.((((((-----(.((.....))...)))).......((((..(((((((.......))))))))))).............)))).)).... ( -13.00) >consensus AUUCCGUAAACCCCCUACAUCCGACGCUCUUAGCUCUGGCAAUUUAUUUGCAAAUAUUUUUCAACAUCAAAAAUAUGUUUU_CUUUUUGCCU___________ .........................((.....))...(((((.......(((..(((((((.......))))))))))........)))))............ ( -7.22 = -7.66 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:30 2006