Locus 4979

Sequence ID	3L_DroMel_CAF1
Location	13,741,227 – 13,741,318
Length	91
Max. P	0.975645

overview

Window 9

Location	13,741,227 – 13,741,318
Length	91
Sequences	5
Columns	91
Reading direction	forward
Mean pairwise identity	98.46
Mean single sequence MFE	-19.75
Consensus MFE	-19.60
Energy contribution	-19.60
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-1.62
Structure conservation index	0.99
SVM decision value	1.75
SVM RNA-class probability	0.975645
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13741227 91 + 23771897
UGUAAACUUUAUUGCAAAGGCGCACUGUAUCUAUGCGAUCAGAGCAAAUUAAAAUUCCAAUAUAUCUGCAUAUUGGACUAACAAGUGCAGU
(((((......))))).....(((((((.....(((.......))).........((((((((......))))))))...)).)))))... ( -19.60)
>DroSec_CAF1 148019 91 + 1
GGUAAACUUUAUUGCAAAGGCGCACUGUAUCUAUGCGAUCAGAGCAAAUUAAAAUUCCAAUAUAUCUGCAUAUUGGACUAACAAGUGCAGU
..........((((((.....((.(((.(((.....)))))).))..........((((((((......))))))))........)))))) ( -19.60)
>DroSim_CAF1 159153 91 + 1
GGUAAACUUUAUUGCAAAGGCGCACUGUAUCUAUGCGAUCAGAGCAAAUUAAAAUUCCAAUAUAUCUGCAUAUUGGACUAACAAGUGCAGU
..........((((((.....((.(((.(((.....)))))).))..........((((((((......))))))))........)))))) ( -19.60)
>DroEre_CAF1 154633 91 + 1
GCUAAACUUUAUUGCAAAGGCGCACUGUAUCUAUGCGAUCAGAGCAAAUUAAAAUUCCAAUAUAUCUGCAUAUUGGACUAACAAGUGCAGU
..........((((((.....((.(((.(((.....)))))).))..........((((((((......))))))))........)))))) ( -19.60)
>DroYak_CAF1 158891 91 + 1
GCUAAACUUUAUUGCAAAGGCGCACUGUAUCUAUGCGAUCAGGGCAAAUUAAAAUUCCAAUAUAUCUGCAUAUUGGACUAACAAGUGCAGU
......(((.((((((.((..((...))..)).)))))).)))(((.........((((((((......))))))))........)))... ( -20.33)
>consensus
GGUAAACUUUAUUGCAAAGGCGCACUGUAUCUAUGCGAUCAGAGCAAAUUAAAAUUCCAAUAUAUCUGCAUAUUGGACUAACAAGUGCAGU
..........((((((.....((.(((.(((.....)))))).))..........((((((((......))))))))........)))))) (-19.60 = -19.60 +  -0.00)

alignment

secondary structure

dotplot

Window 0

Location	13,741,227 – 13,741,318
Length	91
Sequences	5
Columns	91
Reading direction	reverse
Mean pairwise identity	98.46
Mean single sequence MFE	-19.94
Consensus MFE	-19.94
Energy contribution	-19.94
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-1.39
Structure conservation index	1.00
SVM decision value	1.03
SVM RNA-class probability	0.903798
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13741227 91 - 23771897
ACUGCACUUGUUAGUCCAAUAUGCAGAUAUAUUGGAAUUUUAAUUUGCUCUGAUCGCAUAGAUACAGUGCGCCUUUGCAAUAAAGUUUACA
..((((........(((((((((....)))))))))..........((.((((((.....))).))).)).....))))............ ( -20.10)
>DroSec_CAF1 148019 91 - 1
ACUGCACUUGUUAGUCCAAUAUGCAGAUAUAUUGGAAUUUUAAUUUGCUCUGAUCGCAUAGAUACAGUGCGCCUUUGCAAUAAAGUUUACC
..((((........(((((((((....)))))))))..........((.((((((.....))).))).)).....))))............ ( -20.10)
>DroSim_CAF1 159153 91 - 1
ACUGCACUUGUUAGUCCAAUAUGCAGAUAUAUUGGAAUUUUAAUUUGCUCUGAUCGCAUAGAUACAGUGCGCCUUUGCAAUAAAGUUUACC
..((((........(((((((((....)))))))))..........((.((((((.....))).))).)).....))))............ ( -20.10)
>DroEre_CAF1 154633 91 - 1
ACUGCACUUGUUAGUCCAAUAUGCAGAUAUAUUGGAAUUUUAAUUUGCUCUGAUCGCAUAGAUACAGUGCGCCUUUGCAAUAAAGUUUAGC
..((((........(((((((((....)))))))))..........((.((((((.....))).))).)).....))))............ ( -20.10)
>DroYak_CAF1 158891 91 - 1
ACUGCACUUGUUAGUCCAAUAUGCAGAUAUAUUGGAAUUUUAAUUUGCCCUGAUCGCAUAGAUACAGUGCGCCUUUGCAAUAAAGUUUAGC
..((((........(((((((((....)))))))))..........((.((((((.....))).))).)).....))))............ ( -19.30)
>consensus
ACUGCACUUGUUAGUCCAAUAUGCAGAUAUAUUGGAAUUUUAAUUUGCUCUGAUCGCAUAGAUACAGUGCGCCUUUGCAAUAAAGUUUACC
..((((........(((((((((....)))))))))..........((.((((((.....))).))).)).....))))............ (-19.94 = -19.94 +  -0.00)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:29 2006