Locus 4977

Sequence ID 3L_DroMel_CAF1
Location 13,739,427 – 13,739,528
Length 101
Max. P 0.787807
window7857

overview

Window 7

Location 13,739,427 – 13,739,528
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 96.04
Mean single sequence MFE -24.46
Consensus MFE -20.60
Energy contribution -21.20
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.84
SVM decision value 0.58
SVM RNA-class probability 0.787807
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13739427 101 + 23771897
ACCAAGCGAGUGCUUGUAUUUUAUAGUCAAUAAUUGAGCAAUAAAUGCAGGUUUUUAAGUGUUUGGAGAAACAUAGCACUUCUAUUUGGGCGAUAUUCUCC
.(((((.(((.((((((((((.....(((.....))).....)))))))))).)))(((((((((......)).)))))))...)))))............ ( -21.20)
>DroSec_CAF1 146236 101 + 1
ACCAAGCGAGUGCUUGUAUUUUAUGGUCAAUAAUUGAGCAAUAAAUGCAGGUUUUUAAGUGUUUGGAGAAACAUAGCACUUCUAUUUGGGCGAUAUUCUCC
.(((((.(((.((((((((((..((.(((.....))).))..)))))))))).)))(((((((((......)).)))))))...)))))............ ( -24.60)
>DroSim_CAF1 157005 101 + 1
ACCAAGCGAGUGCUUGUAUUUUACGGUCAAUAAUUGAGCAAUAAAUGCAGGUUUUUAAGUGUUUGGAGAAACAUAGCACUUCUAUUUGGACGAUAUUCUCC
.(((((.(((.((((((((((...(.(((.....))).)...)))))))))).)))(((((((((......)).)))))))...)))))............ ( -23.20)
>DroEre_CAF1 152835 101 + 1
ACCAAGCGAGUGCUGGUAUUUUAUGGUCAAUAAUUGAGCAAUAAAUGCAGGUUUUUAAGUGUUUGGAGAAACAUAGCACUUCUAUUUGGGCAAUAUUCUCA
.(((((.((((((((((((((..((.(((.....))).))..))))))..((((((..(....)..)))))).))))))))...)))))............ ( -24.70)
>DroYak_CAF1 157015 101 + 1
AACAAGAGAGUGCUGGUAUUUUAUGGUCAAUAAUUGAGCAAUAAAUGCAGGUUUUUAAGUGUUUGGAGAAACAUAGCACUUCUAUUUGGGCGGUAUUCUCA
.....((((((((((((((((..((.(((.....))).))..))))))........(((((((((......)).))))))).........)))))))))). ( -28.60)
>consensus
ACCAAGCGAGUGCUUGUAUUUUAUGGUCAAUAAUUGAGCAAUAAAUGCAGGUUUUUAAGUGUUUGGAGAAACAUAGCACUUCUAUUUGGGCGAUAUUCUCC
.(((((.(((((((.((((((..((.(((.....))).))..))))))..........((((((....)))))))))))))...)))))............ (-20.60 = -21.20 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:26 2006