Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,736,883 – 13,736,991 |
Length | 108 |
Max. P | 0.631225 |
Location | 13,736,883 – 13,736,991 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 85.30 |
Mean single sequence MFE | -30.42 |
Consensus MFE | -18.62 |
Energy contribution | -20.12 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.04 |
Mean z-score | -2.10 |
Structure conservation index | 0.61 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.631225 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13736883 108 + 23771897 UGGCUAUAAUACGUUAUAAUUUGUUAUUGAGUUCUCUUCAGAGCAGCUGCAAAAAUGCAGGGAAAAAAACGAG-----AAAAACGA----GAGCAGCCAGAGC-CGGGCUGAACUGAA ...........((((....((((((.....(((((....)))))..(((((....))))).......))))))-----...))))(----(..(((((.....-..)))))..))... ( -24.20) >DroPse_CAF1 138201 116 + 1 UGGCUAUAAUACGUUAUAAUUUGUUAUUGAGUUCUGUUCAGAGCAGCUGCAAAAAUGCAGGAAA--AACCGAGAGGAGAAAUAGGAGCAGGAGCAGCCGGAGCGCUGUCUGAGCGGAG ..(((.(((((((........)).))))))))((((((((((.((((((((....))))((...--..((....))..........((....))..)).....)))))))))))))). ( -32.40) >DroYak_CAF1 154476 107 + 1 UGGCUAUAAUACGUUAUAAUUUGUUAUUGAGUUCUCUUCAGAGCAGCUGCAAAAAUGCAGGCAAA-AAACGAG-----AAAAAUGA----GAGCAGCCCAAAC-CGGGCUGAGCUCAA ...........((((....(((((......(((((....)))))..(((((....))))))))))-.))))..-----.....(((----(..((((((....-.))))))..)))). ( -32.70) >DroPer_CAF1 139505 116 + 1 UGGCUAUAAUACGUUAUAAUUUGUUAUUGAGUUCUGUUCAGAGCAGCUGCAAAAAUGCAGGAAA--AACCGAGAGGAGAAAUAGGAGCAGGAGCAGCCGGAGCGCUGUCUGAGCGGAG ..(((.(((((((........)).))))))))((((((((((.((((((((....))))((...--..((....))..........((....))..)).....)))))))))))))). ( -32.40) >consensus UGGCUAUAAUACGUUAUAAUUUGUUAUUGAGUUCUCUUCAGAGCAGCUGCAAAAAUGCAGGAAA__AAACGAG_____AAAAAGGA____GAGCAGCCGGAGC_CGGGCUGAGCGGAA ..(((......((((...............(((((....)))))..(((((....))))).......))))......................(((((((....)))))))))).... (-18.62 = -20.12 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:25 2006