Locus 4970

Sequence ID 3L_DroMel_CAF1
Location 13,725,497 – 13,725,591
Length 94
Max. P 0.986591
window7842

overview

Window 2

Location 13,725,497 – 13,725,591
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 98.16
Mean single sequence MFE -19.77
Consensus MFE -19.25
Energy contribution -19.25
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 0.97
SVM decision value 2.05
SVM RNA-class probability 0.986591
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13725497 94 + 23771897
AUUGCGAAAGCAUUUUCCUUUUCCACGUGUAUUAACAUAAUCAAAUUGGAUUUGUGCACAGGAUAAUGAUGAGCUUCAUUAUUGGUUAUAUUCC
..(((....)))..........((..((((((......((((......)))).))))))..((((((((......))))))))))......... ( -19.90)
>DroPse_CAF1 125273 94 + 1
AUUGCGAAAGCAUUUUCCUUUUCCCCGUGUAUUAACAUAAUCAAAUUGGAUUUGUGCACAGGAUAAUGAUGAGCUUCAUUAUUGGUUAUAUUGC
..(((....)))...........((.((((((......((((......)))).)))))).)).((((((((.....)))))))).......... ( -20.20)
>DroEre_CAF1 139085 94 + 1
AUUGCGAAAGCAUUUUCCUUUUCCACGUGUAUUAACAUAAUCAAAUUGGAUUUGUGCACAGGAUAAUGAUGAGCUUCAUUAUUGGUUAUAUUCC
..(((....)))..........((..((((((......((((......)))).))))))..((((((((......))))))))))......... ( -19.90)
>DroYak_CAF1 142863 94 + 1
AUUGCGAAAGCAUUUUCCUUUUCCACGUGUAUUAACAUAAUCAAAUUGGAUUUGUGCACAGGAUAAUGAUGAGCUUCAUUAUUGGUUAUAUUCC
..(((....)))..........((..((((((......((((......)))).))))))..((((((((......))))))))))......... ( -19.90)
>DroAna_CAF1 193375 94 + 1
AUUGCAAAAGCAUUUUCCUUUUCCACGUGUAUUAACAUAAUCAAAUUGGAUUUGUGCACAGGAUAAUGAUGAGCUUCAUUAUUGGUUGUAUUCC
..(((((..((((..(((..((....((((....)))).....))..)))...))))....((((((((......))))))))..))))).... ( -18.50)
>DroPer_CAF1 126658 94 + 1
AUUGCGAAAGCAUUUUCCUUUUCCCCGUGUAUUAACAUAAUCAAAUUGGAUUUGUGCACAGGAUAAUGAUGAGCUUCAUUAUUGGUUAUAUUGC
..(((....)))...........((.((((((......((((......)))).)))))).)).((((((((.....)))))))).......... ( -20.20)
>consensus
AUUGCGAAAGCAUUUUCCUUUUCCACGUGUAUUAACAUAAUCAAAUUGGAUUUGUGCACAGGAUAAUGAUGAGCUUCAUUAUUGGUUAUAUUCC
..(((....))).........(((..((((((......((((......)))).)))))).)))((((((((.....)))))))).......... (-19.25 = -19.25 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:12 2006