Locus 497

Sequence ID 3L_DroMel_CAF1
Location 1,397,533 – 1,397,631
Length 98
Max. P 0.924952
window746

overview

Window 6

Location 1,397,533 – 1,397,631
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 91.84
Mean single sequence MFE -40.23
Consensus MFE -36.65
Energy contribution -36.77
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.36
Structure conservation index 0.91
SVM decision value 1.17
SVM RNA-class probability 0.924952
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1397533 98 + 23771897
AGGAAUCGAAAGGGGGCGGAGGAAGAAGCGGCACGCACGCAACCUGCGGCAGCUGCUACCUCAGCCUCCUCAAGCGGAAUCCCUAUCCCUUCGCUCGA
.....((((.(((((((.((((....((((((..((.(((.....))))).)))))).)))).)))))))...(((((...........))))))))) ( -40.80)
>DroSec_CAF1 52468 98 + 1
AGGAAUCGAAAGGGGGCGGAGGAAGAAGCGGCACGCACGCAACCUGCGGCAGCUGCUACCUCAGCCUCCUCAAGCGGAAUCCCUAUCCCUUCGUUCGA
.....((((((((((((.((((....((((((..((.(((.....))))).)))))).)))).))))))).(((.(((.......))))))..))))) ( -40.40)
>DroYak_CAF1 55809 91 + 1
AGGAAUCGAAAGGGGGCGGAGGAAGAAGCGGCACGCACGCAACCUGCGGCAGCUGCUACCUCAGCCUCUGCGAUCGGAAUCCC-------UCGCUCGA
.....((((..((((((.((((....((((((..((.(((.....))))).)))))).)))).))))))((((..((....))-------)))))))) ( -39.50)
>consensus
AGGAAUCGAAAGGGGGCGGAGGAAGAAGCGGCACGCACGCAACCUGCGGCAGCUGCUACCUCAGCCUCCUCAAGCGGAAUCCCUAUCCCUUCGCUCGA
.(((.(((..(((((((.((((....((((((..((.(((.....))))).)))))).)))).)))))))....)))..)))................ (-36.65 = -36.77 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:33 2006