Locus 4967

Sequence ID 3L_DroMel_CAF1
Location 13,723,031 – 13,723,141
Length 110
Max. P 0.655160
window7837

overview

Window 7

Location 13,723,031 – 13,723,141
Length 110
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.86
Mean single sequence MFE -26.50
Consensus MFE -19.55
Energy contribution -20.97
Covariance contribution 1.42
Combinations/Pair 1.04
Mean z-score -2.05
Structure conservation index 0.74
SVM decision value 0.25
SVM RNA-class probability 0.655160
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13723031 110 + 23771897
UUUGAUUCAAUUUCUGCAAUUUAUUUGCAAUUUGGCAGACGCCGACAUCUUUUGCUUUUUAUCUCUUUGAUGAUUGAAAGCACACGUACCAGGAUCACCAC----------GCCGCUGGC
..((((((......(((((.....)))))..(((((....))))).......(((((((.(((........))).))))))).........))))))....----------(((...))) ( -25.80)
>DroPse_CAF1 121977 93 + 1
UUUGAUUCAAUUUCUGCAAUUUAUUUGCAAUUUGGCAGACGCCGG-GUCUUUUGCUUUUUAUCUCUUUGAUGAUUGAAAGCACACGUUCUCGC-G-------------------------
...(((((......(((((.....)))))....(((....)))))-)))...(((((((.(((........))).)))))))...........-.------------------------- ( -22.20)
>DroEre_CAF1 136627 110 + 1
UUUGAUUCAAUUUCUGCAAUUUAUUUGCAAUUUGGCAGACGCCGACGUCUUUUGCUUUUUAUCUCUUUGAUGAUUGAAAGCACACGUACCAGGAUCACCAU----------GCUGCUGGC
..((((((......(((((.....)))))...(((.(((((....)))))..(((((((.(((........))).)))))))......)))))))))(((.----------.....))). ( -27.30)
>DroYak_CAF1 140521 120 + 1
UUUGAUUCAAUUUCUGCAAUUUAUUUGCAAUUUGGCAGACGCCGACGUCUCUUGCUUUUUAUCUCUUUGAUGAUUGAAAGCACACGUACCAGGAUCACCACGCCACGCCACGCCGCUGGC
..((((((......(((((.....)))))...(((.(((((....)))))..(((((((.(((........))).)))))))......)))))))))....((((.((......)))))) ( -32.40)
>DroAna_CAF1 191114 105 + 1
UUUGAUUCAAUUUCUGCAAUUUAUUUGCAAUUUGGCAGACGCCGGCGUCUUCUGCUUUUUAUCUCUUUGAUGAUUGAAAGCACACGUACCAGGAUCAG-AU----------GC---CUG-
((((((((......(((((.....)))))...(((.(((((....)))))..(((((((.(((........))).)))))))......))))))))))-).----------..---...- ( -29.10)
>DroPer_CAF1 123342 93 + 1
UUUGAUUCAAUUUCUGCAAUUUAUUUGCAAUUUGGCAGACGCCGG-GUCUUUUGCUUUUUAUCUCUUUGAUGAUUGAAAGCACACGUUCUCGC-G-------------------------
...(((((......(((((.....)))))....(((....)))))-)))...(((((((.(((........))).)))))))...........-.------------------------- ( -22.20)
>consensus
UUUGAUUCAAUUUCUGCAAUUUAUUUGCAAUUUGGCAGACGCCGACGUCUUUUGCUUUUUAUCUCUUUGAUGAUUGAAAGCACACGUACCAGGAUCAC_A___________GC___UGG_
..((((((......(((((.....)))))..(((((....))))).......(((((((.(((........))).))))))).........))))))....................... (-19.55 = -20.97 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:07 2006