Locus 4966

Sequence ID 3L_DroMel_CAF1
Location 13,720,654 – 13,720,765
Length 111
Max. P 0.746116
window7836

overview

Window 6

Location 13,720,654 – 13,720,765
Length 111
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 98.25
Mean single sequence MFE -21.03
Consensus MFE -19.32
Energy contribution -19.18
Covariance contribution -0.14
Combinations/Pair 1.03
Mean z-score -1.15
Structure conservation index 0.92
SVM decision value 0.46
SVM RNA-class probability 0.746116
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13720654 111 + 23771897
AAGCGACCGAAAAAACCGCAUUCGGCAAAAGCCAGCGAUGAAAAUCGAUGCCCGAAAUGACAGUGACAAUUUCAUUUAAUUGGUUUUAAUUAAAUUAAUGAGUGAAUUUUA
..(((...........))).(((((.....((...((((....))))..)))))))..............((((((((.(((((((.....)))))))))))))))..... ( -21.70)
>DroPse_CAF1 119308 110 + 1
AAGCAACCGAA-AAACCGCAUUCGGCAAAAGCCAGCGAUGAAAAUCGAUGCCCGAAAUGACAGUGACAAUUUCAUUUAAUUGGUUUUAAUUAAAUUAAUGAGUGAAUUUUA
..........(-(((((((((..(((....)))..((((....))))))))...((((((.(((....)))))))))....))))))........................ ( -20.90)
>DroEre_CAF1 134275 110 + 1
AAGCGACCGAA-AAACCGCAUUCGGCAAAAGCCAGCGAUGAAAAUCGAUGCCCGAAAUGACAGUGACAAUUUCAUUUAAUUGGUUUUAAUUAAAUUAAUGAGUGAAUUUUA
..(((......-....))).(((((.....((...((((....))))..)))))))..............((((((((.(((((((.....)))))))))))))))..... ( -21.80)
>DroYak_CAF1 138194 110 + 1
AAGCGACCGAA-AAACCGCAUUCGGCAAAAGCCAGCGAUGAAAAUCGAUGCCCGAAAUGACAGUGACAAUUUCAUUUAAUUGGUUUUAAUUAAAUUAAUGAGUGAAUUUUA
..(((......-....))).(((((.....((...((((....))))..)))))))..............((((((((.(((((((.....)))))))))))))))..... ( -21.80)
>DroAna_CAF1 189310 110 + 1
AAGCAACCCAA-AAACCACAUUCGGCAAAAGCCAGCAAUGAAAAUCGAUGCCCGAAAUGACAGUGACAAUUUCAUUUAAUUGGUUUUAAUUAAAUUAAUGAGUGAAUUUUA
...........-......((((((((....)))...(((.(((((((((.....((((((.(((....))))))))).))))))))).)))........)))))....... ( -19.10)
>DroPer_CAF1 120706 110 + 1
AAGCAACCGAA-AAACCGCAUUCGGCAAAAGCCAGCGAUGAAAAUCGAUGCCCGAAAUGACAGUGACAAUUUCAUUUAAUUGGUUUUAAUUAAAUUAAUGAGUGAAUUUUA
..........(-(((((((((..(((....)))..((((....))))))))...((((((.(((....)))))))))....))))))........................ ( -20.90)
>consensus
AAGCAACCGAA_AAACCGCAUUCGGCAAAAGCCAGCGAUGAAAAUCGAUGCCCGAAAUGACAGUGACAAUUUCAUUUAAUUGGUUUUAAUUAAAUUAAUGAGUGAAUUUUA
..................((((((((....)))...(((.(((((((((.....((((((.(((....))))))))).))))))))).)))........)))))....... (-19.32 = -19.18 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:06 2006