Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,720,257 – 13,720,360 |
Length | 103 |
Max. P | 0.916015 |
Location | 13,720,257 – 13,720,360 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 90.62 |
Mean single sequence MFE | -31.04 |
Consensus MFE | -25.10 |
Energy contribution | -24.86 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.12 |
Mean z-score | -1.87 |
Structure conservation index | 0.81 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916015 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13720257 103 + 23771897 GCACAUGCGGCGUAUACUUAAUGCGCGAAAUGGCGGCGCUGGCGGUGCUGGCGGUACCGUAUAUGCGUGCUUAAUUCAAUUUUAUUUAAAUACUUUCGCAAAU .....((((((((((.....))))))(((..((((.(((..(((((((.....)))))))....)))))))...)))...................))))... ( -34.20) >DroSec_CAF1 127245 103 + 1 GCACAUGCGGCGUAUACUUAAUGCGCGAAACGGCGGUGCUGGCGGUACUGUCGGUACCGUAUAUGCGUGCUUAAUUCAAUUUUAUUUAAAUACUUUCGCAAAU .....(((((.((((.......(((((.....((((((((((((....)))))))))))).....)))))((((...........))))))))..)))))... ( -33.70) >DroSim_CAF1 138030 103 + 1 GCACAUGCGGCGUAUACUUAAUGCGCGAAACGGCGGUGCUGGCGGUACUGGCGGUACCGUAUAUGCGUGCUUAAUUCAAUUUUAUUUAAAUACUUUCGCAAAU .....(((((.((((.......(((((.....(((((((((.((....)).))))))))).....)))))((((...........))))))))..)))))... ( -31.80) >DroEre_CAF1 133886 94 + 1 GCACACGCGGCGUAUACUUAAUGCGCGAAACGGCGG---------UGCUGGCUGCGCCGUAUAUGCGUGCUUAAUUCAAUUUUAUUUAAAUACUUUCGCAAAU ((.((((((((((((.....))))))......((((---------(((.....)))))))...)))))).........((((.....))))......)).... ( -29.00) >DroYak_CAF1 137778 97 + 1 GCACACGCGGCGUAUACUUAACGCGCGAAACGGCGGU------GGUGCUGGCAGUGCCGUAUAUGCGUGCUUAAUUCAAUUUUAUUUAAAUACUUGCGCAAAU (((..((((.(((.......)))))))..((((((.(------(.......)).))))))...)))((((.........................)))).... ( -26.51) >consensus GCACAUGCGGCGUAUACUUAAUGCGCGAAACGGCGGUGCUGGCGGUGCUGGCGGUACCGUAUAUGCGUGCUUAAUUCAAUUUUAUUUAAAUACUUUCGCAAAU ......(((((((((((......(((......)))........(((((.....)))))))))))))(((.((((...........)))).)))...))).... (-25.10 = -24.86 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:05 2006