Locus 4964

Sequence ID 3L_DroMel_CAF1
Location 13,719,872 – 13,719,971
Length 99
Max. P 0.938405
window7834

overview

Window 4

Location 13,719,872 – 13,719,971
Length 99
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 81.09
Mean single sequence MFE -19.50
Consensus MFE -15.53
Energy contribution -16.33
Covariance contribution 0.81
Combinations/Pair 1.09
Mean z-score -2.51
Structure conservation index 0.80
SVM decision value 1.27
SVM RNA-class probability 0.938405
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13719872 99 + 23771897
UCAGAAUUUAAUUAAGACAUCAAACUGUGCAAAAAUUAAAA---AAAAA---------ACCAAACGGGUGGAAAAAGGAUUUCACCAAGAGCUUAAUUGAGUUUAGUUGGC
...(((((((((((((...((....(((.............---.....---------.....)))(((((((......)))))))..)).)))))))))))))....... ( -18.60)
>DroSec_CAF1 126852 102 + 1
UCAGAAUUUAAUUAAGACAUCAAAUUGUGCAAAAAUAAAAAAAAAAAAA---------ACCAAACGGGUGGGAAAAGGAUUUCACCAAAAGCUUAAUUGAGUUUAGUUGGC
...((((((((((((((((......))).....................---------........((((..(......)..)))).....)))))))))))))....... ( -19.20)
>DroSim_CAF1 137640 99 + 1
UCAGAAUUUAAUUAAGACAUCAAAUUGUGCAAAAAUUAAAA---AAAAA---------ACCAAACGGGUGGGAAAAGGAUUUCACCAAAAGCUUAAUUGAGUUUAGUUGGC
...((((((((((((((((......))).............---.....---------........((((..(......)..)))).....)))))))))))))....... ( -19.20)
>DroEre_CAF1 133486 108 + 1
UCAGAAUUUAAUUAAGACAUCAAAUUGUGCAAAAAUUAAAA---AAAAAAGAAAAAAUGCCAACCGGGUGGAAAAAGGAUUUCACCAAGAGCUUAAUUGAGUUUAGUUGGC
...(((((((((((((...((...(((.(((..........---.............))))))...(((((((......)))))))..)).)))))))))))))....... ( -21.80)
>DroYak_CAF1 137379 108 + 1
UCAGAAUUUAAUUAAGACAUCAAAUUGUGCAAAAAUUAAAA---AAGAACAAAAAAACGCCAAACGGGUGGAAAAAGGAUUUCACCAAGAGCUUAAUUGAGUUUAGUUGGC
...(((((((((((((...((...(((.((...........---..............)))))...(((((((......)))))))..)).)))))))))))))....... ( -21.11)
>DroPer_CAF1 119768 81 + 1
UCAGAAUUCAAUUAAGACAUAAAA-UGUGGAAAAAGUG---------------------C------UGCGGAAACUGAAUU--AGCAAGAGCUUAAUUGUGUUAAGCUCGG
....((((((..............-.(..(........---------------------)------..)(....)))))))--.....(((((((((...))))))))).. ( -17.10)
>consensus
UCAGAAUUUAAUUAAGACAUCAAAUUGUGCAAAAAUUAAAA___AAAAA_________ACCAAACGGGUGGAAAAAGGAUUUCACCAAGAGCUUAAUUGAGUUUAGUUGGC
...((((((((((((((((......)))......................................(((((((......))))))).....)))))))))))))....... (-15.53 = -16.33 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:04 2006