| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,718,726 – 13,718,826 |
| Length | 100 |
| Max. P | 0.587663 |
| Location | 13,718,726 – 13,718,826 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 82.56 |
| Mean single sequence MFE | -19.81 |
| Consensus MFE | -16.93 |
| Energy contribution | -16.93 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.587663 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13718726 100 - 23771897 CU-UAGCAUACAC------CCACUUACCCCAACUCC----------GCUCCACACUCAGAAAAUGGCCGGCUCAGUUGCACACUUCCGCCAUCGGAAGUUGUAUAUGUUAUUAGCCG ..-(((((((...------..........(((((..----------((((((...........)))..)))..))))).(((((((((....)))))).))).)))))))....... ( -21.10) >DroSec_CAF1 125753 100 - 1 CU-UAGCAUACAU------CCACUUACCCCAACUCC----------GCUCCACACUCAGAAAAUGGCCGCCUCAGUUGCACACUUCCGCCAUCGGAAGUUGUAUAUGUUAUUAGCCG ..-(((((((...------..........(((((..----------((.(((...........)))..))...))))).(((((((((....)))))).))).)))))))....... ( -19.20) >DroSim_CAF1 136529 100 - 1 CU-UAGCAUACAC------CCACUUACCCCAACUCC----------GCUCCACACUCAGAAAAUGGCCGCCUCAGUUGCACACUUCCGCCAUCGGAAGUUGUAUAUGUUAUUAGCCG ..-(((((((...------..........(((((..----------((.(((...........)))..))...))))).(((((((((....)))))).))).)))))))....... ( -19.20) >DroEre_CAF1 132316 95 - 1 CU-UACCAUACAC------CCACUA----CCACUCCC-----------ACUACACUCUGAAAAUGGCCGCCUCAGUUGCACACUUCCGCCAUCGGAAGUUGUAUAUGUUAUUAGCCG ..-..........------......----........-----------................(((.....((..((((.(((((((....)))))))))))..))......))). ( -16.80) >DroYak_CAF1 136179 106 - 1 CU-UAGCAUACAC------CCACUC----CCACUCCCCGCACUCAAGCGCUACACUCGGAAAAUGGCCGACUCAGUUGCACACUUCCGCCAUCGGAAGUUGUAUAUGUUAUUAGCCG ..-..........------....((----(.......(((......)))........)))....(((..(..((..((((.(((((((....)))))))))))..))...)..))). ( -22.36) >DroAna_CAF1 186859 103 - 1 UUAUCGCAGACAUUAUACUCGUCUCACACCAGCAC--------------CCACAUAUUGAAAAUGGCCGCCUCACUUGCACACUUCCGCCAUCGGAAGUUGUAUAUGUUAUUAGCCA .....(.((((.........)))))..........--------------..............((((.....((..((((.(((((((....)))))))))))..))......)))) ( -20.20) >consensus CU_UAGCAUACAC______CCACUUACCCCAACUCC__________GCUCCACACUCAGAAAAUGGCCGCCUCAGUUGCACACUUCCGCCAUCGGAAGUUGUAUAUGUUAUUAGCCG ................................................................(((.....((..((((.(((((((....)))))))))))..))......))). (-16.93 = -16.93 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:03 2006