Locus 4962

Sequence ID 3L_DroMel_CAF1
Location 13,716,110 – 13,716,203
Length 93
Max. P 0.657425
window7832

overview

Window 2

Location 13,716,110 – 13,716,203
Length 93
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 78.84
Mean single sequence MFE -24.81
Consensus MFE -13.13
Energy contribution -13.52
Covariance contribution 0.39
Combinations/Pair 1.11
Mean z-score -1.96
Structure conservation index 0.53
SVM decision value 0.26
SVM RNA-class probability 0.657425
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13716110 93 - 23771897
AAAUGGCUGCCAUAAGUCAGGCAAUCAAAGCCCAAGUUGAAAAGCGGUG-AGA------AA-AAAGU----------GGGGUGGAA---UUCUGCAAUUAACUGGAAUUGCAAA
...((..((((........))))..))...((((.(((....)))....-...------..-....)----------)))......---...(((((((......))))))).. ( -20.54)
>DroPse_CAF1 114369 113 - 1
AAAUGGCUGCCAUAAGUCAGGCAAUCAAAGUCCGAGUGAAAUGGUGGGA-AGAUCCACAGAAACAGCGCUGAUAUAGGGAAUAGAGUGCUCCGGCAAUUAACUGGAAUUGGAAA
...((..((((........))))..))...(((((((......((((..-....))))....)).(((((..(((.....))).)))))(((((.......))))).))))).. ( -28.80)
>DroSim_CAF1 133978 94 - 1
AAAUGGCUGCCAUAAGUCAGGCAAUCAAAGCCCAAGUUGAAAAGCGGCG-AGA------AAAAAAGU----------GGGGUGGAA---UUCUGCAAUUAACUGGAAUUGCAAA
...((..((((........))))..))..((((..(((....))).((.-...------......))----------.))))....---...(((((((......))))))).. ( -22.10)
>DroEre_CAF1 129680 93 - 1
AAAUGGCUGCCAUAAGUCAGGCAAUCAAAGCCCAAGCUGAAAAGCGGCG-AGA------AA-AAAGU----------GGGUUGGAA---UUCUGCAAUUAACUGGAAUUGCAAA
...((..((((........))))..)).(((((..(((....))).((.-...------..-...))----------)))))....---...(((((((......))))))).. ( -25.20)
>DroYak_CAF1 133511 94 - 1
AAAUGGCUGCCAUAAGUCAGGCAAUCAAAGCCCAAGUUGAAAAGCGGCGGAGA------AA-AAAGU----------GGGUUGGAA---UUCUGCAAUUAACUGGAAUUGCCAA
...(((((......)))))(((((((...(((...(((....)))))).....------..-..(((----------..((((.(.---...).))))..))).).)))))).. ( -23.40)
>DroPer_CAF1 115771 113 - 1
AAAUGGCUGCCAUAAGUCAGGCAAUCAAAGUCCGAGUGAAAUGGUGGGA-AGAUCCACAGAAACAGCGCUGAUAUAGGGAAUAGAGUGCUCCGGCAAUUAACUGGAAUUGGAAA
...((..((((........))))..))...(((((((......((((..-....))))....)).(((((..(((.....))).)))))(((((.......))))).))))).. ( -28.80)
>consensus
AAAUGGCUGCCAUAAGUCAGGCAAUCAAAGCCCAAGUUGAAAAGCGGCG_AGA______AA_AAAGU__________GGGAUGGAA___UUCUGCAAUUAACUGGAAUUGCAAA
...((..((((........))))..))....((.((((((...((((............................................))))..))))))))......... (-13.13 = -13.52 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:02 2006