Locus 4961

Sequence ID 3L_DroMel_CAF1
Location 13,710,774 – 13,710,866
Length 92
Max. P 0.860283
window7831

overview

Window 1

Location 13,710,774 – 13,710,866
Length 92
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 89.68
Mean single sequence MFE -12.58
Consensus MFE -10.68
Energy contribution -10.85
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -2.10
Structure conservation index 0.85
SVM decision value 0.83
SVM RNA-class probability 0.860283
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13710774 92 + 23771897
ACACACAG-CACU----CACACACAAAAAUGUAACAAAUGCCUUCCAUUUUAAAUAUGACAACAAUUACAGUUGUACAAUUUGUCCCCUUUUGGCAU
........-....----....................(((((........(((((.(((((((.......))))).))))))).........))))) ( -11.53)
>DroPse_CAF1 109003 97 + 1
GCACACAGACCCUCCCGGACACACAAAAAUGUAACAAAUGCCUUGCAUUUUAAAUAUGACAACAAUUACAGUUGCACAAUUUGUCCCCUUUUGGCAU
.......(.((.....(((((....(((((((((........))))))))).....((.((((.......)))))).....)))))......))).. ( -15.50)
>DroSec_CAF1 117779 92 + 1
ACACAACA-CACU----CACACACAAAAAUGUAACAAAUGCCUUCCAUUUUAAAUAUGACAACAAUUACAGUUGUACAAUUUGUCCCCUUUUGGCAU
........-....----....................(((((........(((((.(((((((.......))))).))))))).........))))) ( -11.53)
>DroSim_CAF1 128689 92 + 1
ACACAACA-CACU----CACACACAAAAAUGUAACAAAUGCCUUCCAUUUUAAAUAUGACAACAAUUACAGUUGUACAAUUUGUCCCCUUUUGGCAU
........-....----....................(((((........(((((.(((((((.......))))).))))))).........))))) ( -11.53)
>DroEre_CAF1 124335 92 + 1
ACACACCG-CACU----CACACACAAAAAUGUAACAAAUGCCUUCCAUUUUAAAUAUGACAACAAUUACAGUUGUACAAUUUGUCCCCUUUUGGCAU
........-....----....................(((((........(((((.(((((((.......))))).))))))).........))))) ( -11.53)
>DroAna_CAF1 175696 81 + 1
------------C----UGCACACAGAAAUGUAACAAAUGCCUUCCAUUUUAAAUAUGACAACAAUUACAGUUGUACAAUUUGUCCCCCUUUGGCAU
------------.----.....(((....))).....(((((........(((((.(((((((.......))))).))))))).........))))) ( -13.83)
>consensus
ACACACCG_CACU____CACACACAAAAAUGUAACAAAUGCCUUCCAUUUUAAAUAUGACAACAAUUACAGUUGUACAAUUUGUCCCCUUUUGGCAU
.....................................(((((........(((((...(((((.......)))))...))))).........))))) (-10.68 = -10.85 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:01 2006