Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,397,333 – 1,397,440 |
Length | 107 |
Max. P | 0.663469 |
Location | 1,397,333 – 1,397,440 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 86.08 |
Mean single sequence MFE | -35.88 |
Consensus MFE | -25.94 |
Energy contribution | -26.86 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.11 |
Mean z-score | -1.79 |
Structure conservation index | 0.72 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663469 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1397333 107 - 23771897 GGC--CAGGGGAAGUGGCGCUAAAGUUGUCAGUCGCCUUGUCCGCAGGCGACGAUCCUCUCUACACCCUAAUUAGGUGUUAUCUACGACUUGGGUUUUCCCCGCUCCUU ((.--..(((((((....(((.(((((((..(((((((.(....))))))))..........(((((.......))))).....))))))).))))))))))...)).. ( -38.30) >DroSec_CAF1 52256 104 - 1 GGC--CAGGGGAAGUGGCGCUAAAGUUGUCAGUCGCCUUGUCCGCAGGCGACGAUCCU--CUACACCCUAAUUAGGUGUUAUCUACGACUUGGGUUUUC-CCGCUCCUU ...--..(((((.((((.(((.(((((((..(((((((.(....))))))))(((...--..(((((.......))))).))).))))))).)))....-))))))))) ( -35.60) >DroEre_CAF1 53983 104 - 1 GGC--AAGGGGCAGUGGCGCUAAAGUUGUCAGUCGCCUUGUCCGCAGGCGACGAUCCU--CUACACCCUAAUUAGGUGUUAUCUACGACUUGGGUUUUC-CUGCUCCUU ...--(((((((((..(.(((.(((((((..(((((((.(....))))))))(((...--..(((((.......))))).))).))))))).))).)..-))))))))) ( -42.50) >DroWil_CAF1 32151 94 - 1 GGCUCAUCCGCAAGUGGCGCUAAAGUUGUCAGUCGUUUUGUCUGCAGGCGACGAUGAU-GCUACACCCUAAUUAGGUGUUAUCUACGACUUUAAA-------------- .((.((..(....)))))..(((((((((..(((((((.(....))))))))...(((-(..(((((.......))))))))).)))))))))..-------------- ( -25.10) >DroYak_CAF1 55623 104 - 1 CGC--AAGGGGAAGUGGCGCUAAAGUUGUCAGUCGCCUUGUCCGCAGGCGACGAUCCU--CUACACCCUAAUUAGGUGUUAUCUACGACUUGGGUUUGC-CUGCUCCUU ...--((((((....((((((.(((((((..(((((((.(....))))))))(((...--..(((((.......))))).))).))))))).)))..))-)..)))))) ( -37.90) >consensus GGC__AAGGGGAAGUGGCGCUAAAGUUGUCAGUCGCCUUGUCCGCAGGCGACGAUCCU__CUACACCCUAAUUAGGUGUUAUCUACGACUUGGGUUUUC_CCGCUCCUU ......(((((.......(((.(((((((..(((((((.(....))))))))..........(((((.......))))).....))))))).)))........))))). (-25.94 = -26.86 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:32 2006