Locus 496

Sequence ID 3L_DroMel_CAF1
Location 1,397,333 – 1,397,440
Length 107
Max. P 0.663469
window745

overview

Window 5

Location 1,397,333 – 1,397,440
Length 107
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 86.08
Mean single sequence MFE -35.88
Consensus MFE -25.94
Energy contribution -26.86
Covariance contribution 0.92
Combinations/Pair 1.11
Mean z-score -1.79
Structure conservation index 0.72
SVM decision value 0.27
SVM RNA-class probability 0.663469
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1397333 107 - 23771897
GGC--CAGGGGAAGUGGCGCUAAAGUUGUCAGUCGCCUUGUCCGCAGGCGACGAUCCUCUCUACACCCUAAUUAGGUGUUAUCUACGACUUGGGUUUUCCCCGCUCCUU
((.--..(((((((....(((.(((((((..(((((((.(....))))))))..........(((((.......))))).....))))))).))))))))))...)).. ( -38.30)
>DroSec_CAF1 52256 104 - 1
GGC--CAGGGGAAGUGGCGCUAAAGUUGUCAGUCGCCUUGUCCGCAGGCGACGAUCCU--CUACACCCUAAUUAGGUGUUAUCUACGACUUGGGUUUUC-CCGCUCCUU
...--..(((((.((((.(((.(((((((..(((((((.(....))))))))(((...--..(((((.......))))).))).))))))).)))....-))))))))) ( -35.60)
>DroEre_CAF1 53983 104 - 1
GGC--AAGGGGCAGUGGCGCUAAAGUUGUCAGUCGCCUUGUCCGCAGGCGACGAUCCU--CUACACCCUAAUUAGGUGUUAUCUACGACUUGGGUUUUC-CUGCUCCUU
...--(((((((((..(.(((.(((((((..(((((((.(....))))))))(((...--..(((((.......))))).))).))))))).))).)..-))))))))) ( -42.50)
>DroWil_CAF1 32151 94 - 1
GGCUCAUCCGCAAGUGGCGCUAAAGUUGUCAGUCGUUUUGUCUGCAGGCGACGAUGAU-GCUACACCCUAAUUAGGUGUUAUCUACGACUUUAAA--------------
.((.((..(....)))))..(((((((((..(((((((.(....))))))))...(((-(..(((((.......))))))))).)))))))))..-------------- ( -25.10)
>DroYak_CAF1 55623 104 - 1
CGC--AAGGGGAAGUGGCGCUAAAGUUGUCAGUCGCCUUGUCCGCAGGCGACGAUCCU--CUACACCCUAAUUAGGUGUUAUCUACGACUUGGGUUUGC-CUGCUCCUU
...--((((((....((((((.(((((((..(((((((.(....))))))))(((...--..(((((.......))))).))).))))))).)))..))-)..)))))) ( -37.90)
>consensus
GGC__AAGGGGAAGUGGCGCUAAAGUUGUCAGUCGCCUUGUCCGCAGGCGACGAUCCU__CUACACCCUAAUUAGGUGUUAUCUACGACUUGGGUUUUC_CCGCUCCUU
......(((((.......(((.(((((((..(((((((.(....))))))))..........(((((.......))))).....))))))).)))........))))). (-25.94 = -26.86 +   0.92) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:32 2006