Locus 4958

Sequence ID 3L_DroMel_CAF1
Location 13,708,783 – 13,708,876
Length 93
Max. P 0.650274
window7826

overview

Window 6

Location 13,708,783 – 13,708,876
Length 93
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 94.21
Mean single sequence MFE -25.02
Consensus MFE -23.19
Energy contribution -22.97
Covariance contribution -0.22
Combinations/Pair 1.15
Mean z-score -1.02
Structure conservation index 0.93
SVM decision value 0.24
SVM RNA-class probability 0.650274
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13708783 93 - 23771897
GACGAA-AAGUGGUGGCAGCUGCAGCAGCUGGCAGGAUUAAGAUAACACUGCAUUUACGGUUAGUAAAGUUUUAUGGUGCGGCCAUGACUUGAU
......-((((.(((((....(((.((....((((..(((...)))..)))).(((((.....)))))......)).))).))))).))))... ( -26.60)
>DroSec_CAF1 115795 93 - 1
GACGAA-AAGUGGUGGCAGCUGCAGCAGCUGGCAGGAUUAAGAUAACACUGCAUUUACGGUUAGUAAAGUUUUAUGGUGCGGCCAUGACUUGAU
......-((((.(((((....(((.((....((((..(((...)))..)))).(((((.....)))))......)).))).))))).))))... ( -26.60)
>DroSim_CAF1 126706 93 - 1
GACGAA-AAGUGGUGGCAGCUGCAGCAGCUGGCAGGAUUAAGAUAACACUGCAUUUACGGUUAGUAAAGUUUUAUGGUGCGGCCAUGACUUGAU
......-((((.(((((....(((.((....((((..(((...)))..)))).(((((.....)))))......)).))).))))).))))... ( -26.60)
>DroEre_CAF1 122263 93 - 1
GACGAA-AAGUGGUGGCAGCUGCUGCAGCUGGCAGGAUUAAGAUAACACUGCAUUUACGGUUAGUAAAGUUUUAUGGUGCGGCCAUGACUUGAU
......-((((.((((((((((...))))).((((..(((...)))..)))).(((((.....))))).............))))).))))... ( -25.40)
>DroYak_CAF1 125797 93 - 1
GACGAA-AAGUGGUGGCAGCUGCUGCAGCUGGCAGGAUUAAGAUAACACUGCAUUUACGGUUAGUAAACUUUUAUGGUGCGGCCAUGACUUGAU
......-((((.(((((..(((((......)))))..............((((((...((((....)))).....))))))))))).))))... ( -25.20)
>DroAna_CAF1 172882 91 - 1
AACGACCGAGAGGUGGCAGUUG---CAGCUGGUUGGAUUAAGAUAACAUUGCAUUUACGGUUAGUAAAGUUUUAUGGUGUGGCCAUGACUUGUU
..(.(((....))).)....((---(((...((((........)))).)))))(((((.....)))))...((((((.....))))))...... ( -19.70)
>consensus
GACGAA_AAGUGGUGGCAGCUGCAGCAGCUGGCAGGAUUAAGAUAACACUGCAUUUACGGUUAGUAAAGUUUUAUGGUGCGGCCAUGACUUGAU
.......((((.((((((((((...))))).((((..(((...)))..)))).(((((.....))))).............))))).))))... (-23.19 = -22.97 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:56 2006