Locus 4957

Sequence ID 3L_DroMel_CAF1
Location 13,708,477 – 13,708,580
Length 103
Max. P 0.847174
window7825

overview

Window 5

Location 13,708,477 – 13,708,580
Length 103
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 84.36
Mean single sequence MFE -26.24
Consensus MFE -15.82
Energy contribution -15.98
Covariance contribution 0.16
Combinations/Pair 1.14
Mean z-score -2.63
Structure conservation index 0.60
SVM decision value 0.77
SVM RNA-class probability 0.847174
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13708477 103 - 23771897
UGCCA----GUCCUGCAGGGGCAUUAAUUAAGAAAUAUUUUUAGGGUUUCUCCUCUUUUUUUUUAGACCCUUUCAUAUUGAUCCCCAAGCAAAGCGCAGUACUGGAC
..(((----((.((((.((((.((((((...(((........(((((((...............))))))))))..))))))))))..((...)))))).))))).. ( -31.46)
>DroSec_CAF1 115518 83 - 1
UGCCA----GUCCUGCAGGGGCAUUAAUUAAGGAAUAUUC--------------------UUUUAGACCCUUUCAUAUUGAUCCCCAAGCAAAGCGCAGUACUGGAC
..(((----((.((((.((((.((((((.((((..((...--------------------...))...))))....))))))))))..((...)))))).))))).. ( -28.40)
>DroSim_CAF1 126411 101 - 1
UGCCA----GUCCUGCAGGGGCAUUAAUUAAGAAAUAUUUUUAGGGCUUUUCCCCUUU--UUUUAGACCCUUUCAUAUUGAUCCCCAAGCAAAGCGCAGUACUGGAC
..(((----((.((((.((((.((((((.(((...((.....((((......))))..--...))....)))....))))))))))..((...)))))).))))).. ( -30.50)
>DroEre_CAF1 121968 102 - 1
CACCAGUA--UUCUGCAGAGGCAUUAAUUAAGAAAUAUUUUUAGGGCUUUUCUCCUU---UUUAAGACCCUUUCAUAUUGAUCCCCAAGCAAAGCGUAGUACUGGAC
..((((((--((.(((....((...........(((((....(((((((........---...))).))))...))))).........))...))).)))))))).. ( -22.15)
>DroYak_CAF1 125487 105 - 1
CACCAGCAAGUCCUGCAGAGGCAUUAAUUAAGAAAUAUUUUUAGGGCUUUUCCCCUUU--UUUAAGACCCUUUCAUAUUGAUCCCCAAGCAAAGCGUAGUACUGGAC
..((((...((..(((...((.((((((...((((..((((.((((......))))..--...))))...))))..)))))).))...)))..))......)))).. ( -18.70)
>consensus
UGCCA____GUCCUGCAGGGGCAUUAAUUAAGAAAUAUUUUUAGGGCUUUUCCCCUUU__UUUUAGACCCUUUCAUAUUGAUCCCCAAGCAAAGCGCAGUACUGGAC
..(((....((.((((.((((.((((((...((((.......((((......))))..............))))..))))))))))..((...)))))).))))).. (-15.82 = -15.98 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:55 2006