Locus 4956

Sequence ID 3L_DroMel_CAF1
Location 13,707,935 – 13,708,040
Length 105
Max. P 0.812170
window7824

overview

Window 4

Location 13,707,935 – 13,708,040
Length 105
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 93.50
Mean single sequence MFE -33.56
Consensus MFE -29.06
Energy contribution -28.38
Covariance contribution -0.68
Combinations/Pair 1.13
Mean z-score -1.41
Structure conservation index 0.87
SVM decision value 0.65
SVM RNA-class probability 0.812170
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13707935 105 + 23771897
UCCGUGAACCCAGAGUCCUGUCCUAUGGGCCAUUCCAUUUCAUUGGGAUGUAUGGGGUAUAUAGGGUAC---AUGGGCUACAUGAUGGUGGGGAUAAAUGGGGGACUU
(((((...((((..(((.(((((((((..((((((((......)))))).((((.....)))).))..)---)))))..))).)))..)))).....)))))...... ( -34.10)
>DroSec_CAF1 114978 105 + 1
UCCGUGAACCCAGAGUCCUGUCCUAUGGGCCAUUCCAUUUCAUUGGGAUGUAUGGGGUAUAUAGGGUAC---AUGGGCUACAUGAUGGUGGGGAUAAAUGGGGGACUU
(((((...((((..(((.(((((((((..((((((((......)))))).((((.....)))).))..)---)))))..))).)))..)))).....)))))...... ( -34.10)
>DroSim_CAF1 125871 105 + 1
UCCGUGAACCCAGAGUCCUGUCCUAUGGGCCAUUCCAUUUCAUUGGGAUGUAUGGGGUAUAUAGGGUGC---AUGGGCUACAUGAUGGUGGGGAUAAAUGGGGGACUU
(((((...((((..(((.(((((((((.(((((((((......)))))).((((.....)))).))).)---)))))..))).)))..)))).....)))))...... ( -35.70)
>DroEre_CAF1 121426 105 + 1
UCCGUGAACCCAGAGUCCUGUCCUAUGGGCCAUUCCAUUUCAAUGGGAUGUAUGGGGUGUAUGGGGUAU---AUGGGGUACAUGAUGGUGGGUAUAAAUGGGGGACUU
(((((..(((((..(((.(((((((((.((((((((((....)))))))((((.....))))..))).)---)))))..))).)))..)))))....)))))...... ( -33.10)
>DroYak_CAF1 124929 106 + 1
UCCGUGAACCCAGAGUCCUGUCCUAUGGGCCAUUCCAUUUCAUUGGGAUGUAUGGGG--UAUGGGGUAUAGUAUAGGGUAUGUGAUGGUGGGGACAAAUGGGGGACUU
........((((..(((((.(((((((...(((((((......))))))))))))))--(((.(.((((........)))).).)))...)))))...))))...... ( -30.80)
>consensus
UCCGUGAACCCAGAGUCCUGUCCUAUGGGCCAUUCCAUUUCAUUGGGAUGUAUGGGGUAUAUAGGGUAC___AUGGGCUACAUGAUGGUGGGGAUAAAUGGGGGACUU
(((((...((((..(((.(..((((((.(((((((((......))))))......))).))))))..)....(((.....))))))..)))).....)))))...... (-29.06 = -28.38 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:54 2006