Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,707,546 – 13,707,658 |
Length | 112 |
Max. P | 0.602977 |
Location | 13,707,546 – 13,707,658 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 96.96 |
Mean single sequence MFE | -20.04 |
Consensus MFE | -17.58 |
Energy contribution | -18.02 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.33 |
Structure conservation index | 0.88 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602977 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13707546 112 + 23771897 UUUUAGUAAUAGGCCUUUCGAUUUUAAACACUCCAUCGAACGAGAUUAAAUUAAAAUCACAGAAAAUAUGACGAGCACGGAAUACGAUUCCCAACAAAGUCAUUCAAAGGCU ...........(((((((.((((((((...(((........)))......)))))))).........(((((......(((((...))))).......)))))..))))))) ( -20.32) >DroSec_CAF1 114588 112 + 1 UUUUAGUAAUAGGCCUUUCGAUUUUAAACACUUCAUCGAACGAGAUUAAAUUAAAAUCACAGAAAAUAUGACGAGCACGGAAUACGAUUCCCAACAAAGUCAUUCAAAGGCU ...........(((((((.((((((((.....((.((....)))).....)))))))).........(((((......(((((...))))).......)))))..))))))) ( -21.42) >DroSim_CAF1 125481 112 + 1 UUUUAGUAAUAGGCCUUUCUAUUUUAAACACUUCAUCGAACGAGAUUAAAUUAAAAUCACAGAAAAUAUGACGAGCACGGAAUACGAUUCCCAACAAAGUCAUUCAAAGGCU ...........((((((((((((((((.....((.((....)))).....)))))))...)))))..(((((......(((((...))))).......))))).....)))) ( -17.12) >DroEre_CAF1 121034 112 + 1 UUUUAGUAAUAGGCCUUUCGAUUUUAAACACUUCAUCGAACGAGAUUAAAUUAAAAUCACAGAAAAUAUGACGAGCCCGGAAUACGAUUCCCAACAAAGUCAUUCAAAGGCU ...........(((((((.((((((((.....((.((....)))).....)))))))).........(((((......(((((...))))).......)))))..))))))) ( -21.42) >DroYak_CAF1 124524 112 + 1 UUUUAGUAAUAGGCCCUUCGAUUUUAAACACUCCAUCGAACGGGAUUAAAUUAAAAUCAGAGAAAAUAUGACGAGCACGGACUACGACUCCCAACAAAGUCAUUCAAAGGCU ...........((((((..((((((((....(((........))).....))))))))..)).....(((((......(((.......))).......))))).....)))) ( -19.92) >consensus UUUUAGUAAUAGGCCUUUCGAUUUUAAACACUUCAUCGAACGAGAUUAAAUUAAAAUCACAGAAAAUAUGACGAGCACGGAAUACGAUUCCCAACAAAGUCAUUCAAAGGCU ...........(((((((.((((((((........((....)).......)))))))).........(((((......(((((...))))).......)))))..))))))) (-17.58 = -18.02 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:53 2006