Locus 4954

Sequence ID 3L_DroMel_CAF1
Location 13,706,466 – 13,706,557
Length 91
Max. P 0.628087
window7822

overview

Window 2

Location 13,706,466 – 13,706,557
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 81.35
Mean single sequence MFE -17.97
Consensus MFE -15.07
Energy contribution -15.33
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.84
SVM decision value 0.19
SVM RNA-class probability 0.628087
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13706466 91 - 23771897
CCUUUCCAGUUCCCGCCAACAUUAUCCCCCCUCCUUUCACCCUCAGACGAAUGGAGCUCGCCCCAGGGCCAGAUCUAUCGGAUCUCACUCA
....(((.......................((((.(((..........))).))))((.(((....))).)).......)))......... ( -15.40)
>DroSec_CAF1 113526 77 - 1
CCUUUCCAGUUCCCACCAACGUU--------------CCACCUCAGACGAGUGGAGCUCGCCCCAGGGCCAGAUCUAUCGGAUCUCACUCA
....................(((--------------((((.((....)))))))))..(((....))).(((((.....)))))...... ( -20.40)
>DroSim_CAF1 124412 77 - 1
CCUUUCCAGUUCCCGACAACGUU--------------CCCCCUCAGACGAGUGGAGCUCGCCCCAGGGCCAGAUCUAUCGGAUCUCACUCA
............((((....(((--------------((..(((....))).)))))..(((....)))........)))).......... ( -18.80)
>DroEre_CAF1 119958 70 - 1
CCUUUCCCUUU-------UCGUU--------------CCCCCUCAGACGAGUGGAGCUCCCUCCAGGGCCAGAUCUAUCGGAUCUCACUCA
.....(((..(-------(((((--------------........))))))(((((....))))))))..(((((.....)))))...... ( -17.30)
>consensus
CCUUUCCAGUUCCCGCCAACGUU______________CCCCCUCAGACGAGUGGAGCUCGCCCCAGGGCCAGAUCUAUCGGAUCUCACUCA
................................................((((((.((((......)))))(((((.....)))))))))). (-15.07 = -15.33 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:52 2006