Locus 4950

Sequence ID 3L_DroMel_CAF1
Location 13,704,803 – 13,704,907
Length 104
Max. P 0.702333
window7814

overview

Window 4

Location 13,704,803 – 13,704,907
Length 104
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 93.04
Mean single sequence MFE -29.28
Consensus MFE -26.55
Energy contribution -26.55
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.22
Structure conservation index 0.91
SVM decision value 0.35
SVM RNA-class probability 0.702333
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13704803 104 + 23771897
GCACACCAGCUCAAGUGCC-CCGUUGCCAUUGACGACUUGAGCAGCGCAGUCGCGUCGUUUAUAUAGUUGAUGCUGCA-AGUAGAAGAUUUUUGACUUUUAUGCAA
........((((((((...-.((((......)))))))))))).(((((...((((((..........))))))))).-.(((((((........))))))))).. ( -28.60)
>DroPse_CAF1 102653 98 + 1
-------CGCUCAAGUGUCCUCGUUGCCAUUGACGACUUGAGCAGAGCAGUCGCGUCGUUUAUAUAGUUGAUGCUGCA-AGUUGAAGAUUUUUGACUUUUAUGCAA
-------.(((((((((((............))).))))))))...(((((.((((((..........)))))).))(-(((..((....))..))))...))).. ( -28.60)
>DroSec_CAF1 112024 105 + 1
GCACACCAGCUCAAGUGCC-CCGUUGCCAUUGACGACUUGAGCAGCGCAGUCGCGUCGUUUAUAUAGUUGAUGCUGCAAAGUUGAAGAUUUUUGACUUUUAUGCAA
........((((((((...-.((((......))))))))))))...(((((.((((((..........)))))).))(((((..((....))..)))))..))).. ( -29.60)
>DroEre_CAF1 118252 104 + 1
GCACACCAGCUCAAGUGCC-CCGUUGCCAUUGACGACUUGAGCAGCGCAGUCGCGUCGUUUAUAUAGUUGAUGCUGCA-AGUUGAAGAUUUUUGACUUUUAUGCAA
........((((((((...-.((((......))))))))))))...(((((.((((((..........)))))).))(-(((..((....))..))))...))).. ( -28.70)
>DroYak_CAF1 121809 104 + 1
GCACAGCAGCUCAAGUGCC-CCGUUGCCAUUGACGACUUGAGCAGCGCAGUCGCGUCGUUUAUAUAGUUGAUGCUGCA-AGUUGAAGAUUUUUGACUUUUAUGCAA
(((((((.((((((((...-.((((......)))))))))))).((((....))))..........)))).)))((((-(((..((....))..)))....)))). ( -31.60)
>DroPer_CAF1 104071 98 + 1
-------CGCUCAAGUGUCCUCGUUGCCAUUGACGACUUGAGCAGAGCAGUCGCGUCGUUUAUAUAGUUGAUGCUGCA-AGUUGAAGAUUUUUGACUUUUAUGCAA
-------.(((((((((((............))).))))))))...(((((.((((((..........)))))).))(-(((..((....))..))))...))).. ( -28.60)
>consensus
GCACACCAGCUCAAGUGCC_CCGUUGCCAUUGACGACUUGAGCAGCGCAGUCGCGUCGUUUAUAUAGUUGAUGCUGCA_AGUUGAAGAUUUUUGACUUUUAUGCAA
........((((((((.....((((......))))))))))))...(((((.((((((..........)))))).))..(((..((....))..)))....))).. (-26.55 = -26.55 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:45 2006