Locus 4949

Sequence ID 3L_DroMel_CAF1
Location 13,704,177 – 13,704,292
Length 115
Max. P 0.733361
window7813

overview

Window 3

Location 13,704,177 – 13,704,292
Length 115
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.46
Mean single sequence MFE -21.05
Consensus MFE -14.09
Energy contribution -14.12
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -2.68
Structure conservation index 0.67
SVM decision value 0.43
SVM RNA-class probability 0.733361
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13704177 115 - 23771897
CAAAUGAAAUCACACUGACCAGGCCCUAGAAUCAUUUUUCAAAAAUCAUUCACAGCCAAGUGUGCAUUCAAUCGUGCAGCACUCUC----UGCCUCCAAGCCCCAAGCCCGGC-CGAAAC
....((((..((((((.....(((....((((.((((.....)))).))))...))).))))))..)))).(((.((((......)----)))......(((........)))-)))... ( -23.10)
>DroPse_CAF1 101896 112 - 1
CGAAUGAAAUCACACUGACCAGGCUGUAGAAUCAUUUUUCAAAAAUCAUUCACAGCCAAGUGUGCAUUCAAUCGUGUACCACUCUCCCUAUUUCUCUCU-------ACCCCUU-CUACCC
(((.((((..((((((.....((((((.((((.((((.....)))).)))))))))).))))))..)))).))).........................-------.......-...... ( -25.40)
>DroEre_CAF1 117627 109 - 1
CAAAUGAAAUCACACUGACCAGGCCCUAGAAUCAUUUUUCAAAAAUCAUUCACAGCCAAGUGUGCAUUCAAUCGUGCAGCACUCUC----UGCCCCCGA-------ACCCGGCCCAAAAC
....((((..((((((.....(((....((((.((((.....)))).))))...))).))))))..)))).....((((......)----)))..(((.-------...)))........ ( -20.70)
>DroYak_CAF1 121128 108 - 1
CAAAUGAAAUCACACUGACCAGGCCCUAGAAUCAUUUUUCAAAAAUCAUUCACAGCCAAGUGUGCAUUCAAUCGUGCUGCACUCUC----UGCCUCCAA-------GCCCGUC-CGAAAU
..............(.(((..(((....((((.((((.....)))).)))).(((...(((((((((......)))).)))))..)----)).......-------))).)))-.).... ( -19.10)
>DroAna_CAF1 167844 107 - 1
CAAAUGAAAUCACACUGACCAAGCCCUAGAAUCAUUUUUCAAAAAUCAUUCACAGCCAAGUGUGCAUUCAAUCGUGCACUACACUCC---CGCCUCCGC-------CUCCGCC-U--CCC
....((((..((((((......((....((((.((((.....)))).))))...))..))))))..))))...(((.....)))...---.........-------.......-.--... ( -12.60)
>DroPer_CAF1 103314 112 - 1
CGAAUGAAAUCACACUGACCAGGCUGUAGAAUCAUUUUUCAAAAAUCAUUCACAGCCAAGUGUGCAUUCAAUCGUGUACCACUCUCCCUCUUUCUCUCU-------ACCCCUU-CUACCC
(((.((((..((((((.....((((((.((((.((((.....)))).)))))))))).))))))..)))).))).........................-------.......-...... ( -25.40)
>consensus
CAAAUGAAAUCACACUGACCAGGCCCUAGAAUCAUUUUUCAAAAAUCAUUCACAGCCAAGUGUGCAUUCAAUCGUGCACCACUCUC____UGCCUCCAA_______ACCCGUC_CGAAAC
....((((..((((((.....(((....((((.((((.....)))).))))...))).))))))..))))...(((...)))...................................... (-14.09 = -14.12 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:44 2006