Locus 4948

Sequence ID 3L_DroMel_CAF1
Location 13,703,574 – 13,703,670
Length 96
Max. P 0.997768
window7812

overview

Window 2

Location 13,703,574 – 13,703,670
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 92.08
Mean single sequence MFE -29.48
Consensus MFE -24.04
Energy contribution -25.40
Covariance contribution 1.36
Combinations/Pair 1.05
Mean z-score -2.98
Structure conservation index 0.82
SVM decision value 2.93
SVM RNA-class probability 0.997768
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13703574 96 + 23771897
UCUACCAAGGUACAUUAAAAAUGCUGAAAUUCAUAACUGGGCAUGCGAGCGGAAGCAGAACUCCUGGCAACAGGAGCAAAACUAGUAGAUUCAGCC
..(((....)))..........((((((..((...(((((...(((..((....)).....(((((....))))))))...))))).)))))))). ( -30.90)
>DroSec_CAF1 110792 96 + 1
UCUACCAAGGUACAUUAAAAAUGCUGAAAUUCAUAACUGGGCAUGCGGGCGGAAGCAGAACUCCUGGCAACAGGAGCAAAGCUAGUAGAUUCAGCC
..(((....)))..........((((((..((...(((((...(((..((....)).....(((((....))))))))...))))).)))))))). ( -29.60)
>DroSim_CAF1 121598 96 + 1
UCUACCAAGGUACAUUAAAAAUGCUGAAAUUCAUAACUGGGCAUGCGGGCGGAAGCAGAACUCCUGGCAACAGGAGCAAAGCUAGUAGAUUCAGCC
..(((....)))..........((((((..((...(((((...(((..((....)).....(((((....))))))))...))))).)))))))). ( -29.60)
>DroEre_CAF1 117019 96 + 1
UCAAGCAAAGUAAAUUAAAAAUGCUCCAAUUCAUAACUGGGCAUGCGGACGGAAGCAGAACUCCUGGCAACAGGAGCAAAGCCAGGAGAUUCAGCC
....((..............((((.(((.........)))))))((........)).(((((((((((............)))))))).))).)). ( -26.20)
>DroYak_CAF1 120454 96 + 1
UCAAGCUAAGCAACUUAAAAAUGCUCCAAUUCAUAACUGGGCAGGCGGGCGGAAGCAGAACUCCUGGCAACAGGAGCAAAGCCAGGAGAUUCAGCC
.....................(((.(((.........))))))(((..((....)).(((((((((((............)))))))).))).))) ( -31.10)
>consensus
UCUACCAAGGUACAUUAAAAAUGCUGAAAUUCAUAACUGGGCAUGCGGGCGGAAGCAGAACUCCUGGCAACAGGAGCAAAGCUAGUAGAUUCAGCC
......................(((((...((...(((((...(((..((....)).....(((((....))))))))...))))).)).))))). (-24.04 = -25.40 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:43 2006