Locus 4946

Sequence ID 3L_DroMel_CAF1
Location 13,702,660 – 13,702,763
Length 103
Max. P 0.500000
window7809

overview

Window 9

Location 13,702,660 – 13,702,763
Length 103
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 80.65
Mean single sequence MFE -15.87
Consensus MFE -10.53
Energy contribution -10.53
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.27
Structure conservation index 0.66
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13702660 103 + 23771897
AUAUUUGCACAAAUCAUUCGAA--CCGCACACCCUCUCGCCCACUCACUCUCACUUGCACGCAUGGAAAUUGCAAAGCAAUUAUAUGAAUUGCUUAGAUAUUACU
.....((((....((((.((..--..(((..........................))).)).))))....))))((((((((.....)))))))).......... ( -12.17)
>DroPse_CAF1 99897 88 + 1
AUAUUUGCACAAAUCAUUUGAGAGCCGAGC---C------G------CAC--UCUCGCAUGCAUGAAAAUUGCAAAGCAAUUAAAUGAAUUGCUUAGAUAUUACA
(((((((..(((.((((((((..((((((.---.------.------...--.))))..((((.......))))..))..)))))))).)))..))))))).... ( -20.00)
>DroSec_CAF1 109888 91 + 1
AUAUUUGCACAAAUCAUUCGAA--CCGCACACCCU------------CACUCACUUGCACGCAUGGAAAUUGCAAAGCAAUUAUAUGAAUUGCUUAGAUAUUACU
.....((((....((((.((..--..(((......------------........))).)).))))....))))((((((((.....)))))))).......... ( -12.84)
>DroEre_CAF1 116109 97 + 1
AUAUUUGCACAAAUCAUUCGAA--CCGCACACCACCUCUCG------CACUCACUUGCACGCAUGGAAAUUGCAAAGCAAUUAUAUGAAUUGCUUAGAUAUUACU
............(((.......--..(((..(((......(------((......))).....)))....))).((((((((.....)))))))).)))...... ( -13.90)
>DroAna_CAF1 166185 92 + 1
AUAUUUGCACAAAUCAUUCGAA--CCGCAG---------CACACU--CCCACACUCGCCUGCAGGGAAAUUGCAAAGCAAUUAAAUGAAUUGCUUAGAUAUUACA
(((((((..(((.(((((..(.--..((.(---------((...(--(((.((......))..))))...)))...))..)..))))).)))..))))))).... ( -16.30)
>DroPer_CAF1 101334 88 + 1
AUAUUUGCACAAAUCAUUUGAGAGCCGAGC---C------G------CAC--UCUCGCAUGCAUGAAAAUUGCAAAGCAAUUAAAUGAAUUGCUUAGAUAUUACA
(((((((..(((.((((((((..((((((.---.------.------...--.))))..((((.......))))..))..)))))))).)))..))))))).... ( -20.00)
>consensus
AUAUUUGCACAAAUCAUUCGAA__CCGCAC___C______G______CACUCACUCGCACGCAUGGAAAUUGCAAAGCAAUUAAAUGAAUUGCUUAGAUAUUACA
............(((.............................................(((.......))).((((((((.....)))))))).)))...... (-10.53 = -10.53 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:40 2006