| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,700,320 – 13,700,418 |
| Length | 98 |
| Max. P | 0.955850 |
| Location | 13,700,320 – 13,700,418 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 72.34 |
| Mean single sequence MFE | -29.59 |
| Consensus MFE | -15.95 |
| Energy contribution | -16.73 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.955850 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13700320 98 - 23771897 CUGAC---------UGCC-GUGCGGUGACUUGGGCAAAAGUCACUUGCAGAAUUCAUUUGG-----AAACCGUAUUUUGGAAAAACCAUGGCAAAUCUGCAGGCUACUAGGCG .....---------.(((-..((((((((((......))))))))((((((........(.-----...).((....(((.....)))..))...)))))).)).....))). ( -28.90) >DroPse_CAF1 97694 105 - 1 CGGC-UUCAUCUUCUGCCUUUGUGGUGACUUAAACAAAAGUCACUUGCAGCAUUCAAUGGAAAUGAAAACCAU-UUUCGGAAAAAUCAAGGCAAAUCUUCAGCCGGC------ ((((-(........(((((((((((((((((......))))))).))))...(((...(((((((.....)))-)))).))).....)))))).......)))))..------ ( -30.86) >DroSec_CAF1 107652 98 - 1 CUGAC---------UGCC-GUGCGGUGACUUGGGCAAAAGUCACUAGCAGAAUCCAUUUGG-----AAACCGUAUUUUGGAAAAACCAUGGCAAAUCUGCAGGCUACUGGCCG .....---------.(((-((((((((((((......)))))))).(((((.(((....))-----)..((((..(((....)))..))))....)))))..)).)).))).. ( -31.60) >DroEre_CAF1 113755 86 - 1 CUGAC---------UGCC-GUGCGGUGACUUGGGCAAAAGUCACUUGCAGAAUCCAUUGGG-----AAACCGUAUUUUGGAAAAACCA-----AACC-------UAGUAUCCG ...((---------((..-.(((((((((((......))))))).))))...((((.(((.-----...))).....)))).......-----....-------))))..... ( -23.90) >DroYak_CAF1 116934 108 - 1 CUGACUGCCUUGACUGCC-GUGCGGUGACUUGGGCAAAAGUCACUUGCAGAAUCCAUUGGCA----AAACCGUAUUUUGGAAAAACCAUGGCAAAUCUGCAGGCCACUAUCCG .((((((((((.(((((.-..))))).)...))))...)))))((((((((..((((.((..----...(((.....))).....))))))....)))))))).......... ( -31.40) >DroPer_CAF1 99140 105 - 1 CGGC-UUCAUCUUCUGCCUUUGUGGUGACUUAAACAAAAGUCACUUGCAGCAUUCAAUGGAAAUGAAAACCAU-UUUCGGAAAAAUCAAGGCAAAUCUUCAGCCGGC------ ((((-(........(((((((((((((((((......))))))).))))...(((...(((((((.....)))-)))).))).....)))))).......)))))..------ ( -30.86) >consensus CUGAC_________UGCC_GUGCGGUGACUUGGGCAAAAGUCACUUGCAGAAUCCAUUGGG_____AAACCGUAUUUUGGAAAAACCAUGGCAAAUCUGCAGGCUACUA_CCG ..............((((..(((((((((((......)))))))).)))....................(((.....))).........)))).................... (-15.95 = -16.73 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:37 2006