Locus 4943

Sequence ID 3L_DroMel_CAF1
Location 13,699,489 – 13,699,605
Length 116
Max. P 0.657551
window7805

overview

Window 5

Location 13,699,489 – 13,699,605
Length 116
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 92.55
Mean single sequence MFE -23.87
Consensus MFE -20.96
Energy contribution -21.21
Covariance contribution 0.25
Combinations/Pair 1.13
Mean z-score -1.40
Structure conservation index 0.88
SVM decision value 0.26
SVM RNA-class probability 0.657551
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13699489 116 - 23771897
GUAAUUAAUUUUAAAAAGCGCCCCAGGCUAGUCAAAC--AAAGUGUAACAGGAUAUUACAUUUGAUGACUGAGGA--AAACGGAAGUGUUAAAGUGUGUCUACAGAUGAUACAAUUGAUG
.(((((.(((((((...(((((...)))((((((...--.((((((((.......))))))))..))))))....--........)).)))))))(((((.......))))))))))... ( -22.50)
>DroPse_CAF1 96727 115 - 1
GUAAUUAAUUUUAAAAAGAGCCCCAGGCUAGUCAAAC--AAAGUGUAACAGGAUAUUACAUUUGAUGACUGGGGA--AAACGGAAGUGUUAAAGUGUGUCUACAGAUGAUACAA-UGAUG
.......(((((((......((((((....((((((.--..(((((......)))))...))))))..)))))).--..((....)).)))))))(((((.......)))))..-..... ( -27.30)
>DroWil_CAF1 186026 113 - 1
GUAAUUAAUUUUAAAAAGCGCUUCAGGCUAGUCAAACACAAAGUGUAACAGGAUAUUACAUUUGAUGACUGAGGGAAAAGCGGAAGUGUUAAAGUGUGU--AUAGAUGAUAAAAU-----
(((....((((((....(((((((..(((..((..((((...))))..(((..(((((....))))).)))...))..))).)))))))))))))...)--))............----- ( -20.30)
>DroYak_CAF1 116069 116 - 1
GUAAUUAAUUUUAAAAAGCGCCCCAGGCUAGUCAAAC--AAAGUGUAACAGGAUAUUACAUUUGAUGACUGAGGA--AAACGGAAGUGUUAAAGUGUGUCUACAGAUGAUACAAUUGAUG
.(((((.(((((((...(((((...)))((((((...--.((((((((.......))))))))..))))))....--........)).)))))))(((((.......))))))))))... ( -22.50)
>DroAna_CAF1 163374 115 - 1
GUAAUUAAUUUUAAAAAGCGCCCUAGGCUAGUCAAAC--AAAGUGUAACAGGAUAUUACAUUUGAUGACUGGGGA---AACGGAAGUGUUAAAGUGUGUCUACAGAUGAUAAAGCUGAUG
(((....(((((((...((..((....(((((((...--.((((((((.......))))))))..)))))))(..---..)))..)).))))))).....)))................. ( -23.30)
>DroPer_CAF1 98185 115 - 1
GUAAUUAAUUUUAAAAAGAGCCCCAGGCUAGUCAAAC--AAAGUGUAACAGGAUAUUACAUUUGAUGACUGGGGA--AAACGGAAGUGUUAAAGUGUGUCUACAGAUGAUACAA-UGAUG
.......(((((((......((((((....((((((.--..(((((......)))))...))))))..)))))).--..((....)).)))))))(((((.......)))))..-..... ( -27.30)
>consensus
GUAAUUAAUUUUAAAAAGCGCCCCAGGCUAGUCAAAC__AAAGUGUAACAGGAUAUUACAUUUGAUGACUGAGGA__AAACGGAAGUGUUAAAGUGUGUCUACAGAUGAUACAAUUGAUG
.......(((((((......((((((....(((((.......((((((.......)))))))))))..)))))).....((....)).)))))))(((((.......)))))........ (-20.96 = -21.21 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:37 2006