Locus 4941

Sequence ID 3L_DroMel_CAF1
Location 13,698,124 – 13,698,241
Length 117
Max. P 0.653447
window7802

overview

Window 2

Location 13,698,124 – 13,698,241
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.79
Mean single sequence MFE -33.65
Consensus MFE -30.20
Energy contribution -30.12
Covariance contribution -0.08
Combinations/Pair 1.10
Mean z-score -1.20
Structure conservation index 0.90
SVM decision value 0.25
SVM RNA-class probability 0.653447
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13698124 117 - 23771897
AAGCCUGAGUGCAUUUUCUUGUUGUUUGUGUACGCGCGCGUAGUUUUCUGUUUGCCGUGCGUAAAAUCCGCAACGUUACGCCAUUUUGUGUGUGCUUUCUUUUGUGCGCUGC---CCCAG
..((...(((((((......(((((.....((((((((.((((........))))))))))))......)))))(((((((......))))).))........)))))))))---..... ( -32.70)
>DroPse_CAF1 95072 120 - 1
AAGCCUGAGUGCAUUUUCUUGUUGUUUGUGUACGCGCGCGUAGUUUUCUGUUUGCCGUGCGUAAAAUCCGCAACGUUACGCCAUUUUGUGUGUGCUUUCUUUUGUGCGCUCCGCUCCCAA
.(((..((((((((......(((((.....((((((((.((((........))))))))))))......)))))(((((((......))))).))........)))))))).)))..... ( -37.60)
>DroEre_CAF1 111572 117 - 1
AAGCCUGAGUGCAUUUUCUUGUUGUUUGUGUACGCGCGCGUAGUUUUCUGUUUGCCGUGCGUAAAAUCCGCAACGUUACGCCAUUUUGUGUGUGCUUUCUUUUGUGCGCUGC---CCCAG
..((...(((((((......(((((.....((((((((.((((........))))))))))))......)))))(((((((......))))).))........)))))))))---..... ( -32.70)
>DroYak_CAF1 114705 117 - 1
AAGCCUGAGUGCAUUUUCUUGUUGUUUGUGUACGCGCGCGUAGUUUUCUGUUUGCCGUGCGUAAAAUCCGCAACGUUACGCCAUUUUGUGUGUGCUUUCUUUUGUGCACUGC---CCCAG
..((...(((((((......(((((.....((((((((.((((........))))))))))))......)))))(((((((......))))).))........)))))))))---..... ( -33.10)
>DroAna_CAF1 162185 117 - 1
AAGCCUGAGUGCAUUUUCUUGUUGUUUGCGUAUGCGCGCGUAGUUUUCUGUUUGCUGUGCGUAAAAUCCGAAACGUUACGCCAUUUUGUGUGUGCUUUCUUUUGUACGCUGC---CGCAG
..((......)).......(((.((..((((((((((((((((........)))).)))))).......((((.(((((((......))))).))))))....)))))).))---.))). ( -28.20)
>DroPer_CAF1 96529 120 - 1
AAGCCUGAGUGCAUUUUCUUGUUGUUUGUGUACGCGCGCGUAGUUUUCUGUUUGCCGUGCGUAAAAUCCGCAACGUUACGCCAUUUUGUGUGUGCUUUCUUUUGUGCGCUCCGCUCCCAA
.(((..((((((((......(((((.....((((((((.((((........))))))))))))......)))))(((((((......))))).))........)))))))).)))..... ( -37.60)
>consensus
AAGCCUGAGUGCAUUUUCUUGUUGUUUGUGUACGCGCGCGUAGUUUUCUGUUUGCCGUGCGUAAAAUCCGCAACGUUACGCCAUUUUGUGUGUGCUUUCUUUUGUGCGCUGC___CCCAG
.......(((((((......(((((.....((((((((.((((........))))))))))))......)))))(((((((......))))).))........))))))).......... (-30.20 = -30.12 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:33 2006