Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,697,883 – 13,697,975 |
Length | 92 |
Max. P | 0.791639 |
Location | 13,697,883 – 13,697,975 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 92.31 |
Mean single sequence MFE | -27.60 |
Consensus MFE | -24.64 |
Energy contribution | -25.14 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.63 |
Structure conservation index | 0.89 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791639 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13697883 92 + 23771897 UUCGCACCCACA-----------UCCGUGCCACAUUCCUGCUCCUCCGACUCCUUGUGGCGCUAUCAAAGCGUCAGCAUCGACAAACUGCCGCACGACGGAGG ...((((.....-----------...))))............((((((..((..(((((((((.....)))(((......))).....)))))).)))))))) ( -28.70) >DroSec_CAF1 105260 92 + 1 UUCGCACCCACA-----------UCCGUGCCACAUUCCUACCCCUCCGACUCCUUGUGGCGCUAUCAAAGCGUCAGCAUCGACAAACUGCCGCACGACGGAGG ...((((.....-----------...))))............((((((..((..(((((((((.....)))(((......))).....)))))).)))))))) ( -28.90) >DroEre_CAF1 111334 103 + 1 UUCGCACCCACAUCCGCGCCACAUCCGUGCCACAUUCCUGCUCCUGCGACUCCUUGUGGCGCUAUCAAAGCGUCAGCAUCGACAAACUGCCGCACGACAGAGG .......((......((((.......)))).......(((.((.((((........(((((((.....)))))))(((.........))))))).))))).)) ( -24.10) >DroYak_CAF1 114508 92 + 1 UUCGCACCCACA-----------UCCGUGCCACAUUCCUGCUCCUCCGACUCCUUGUGGCGCUAUCAAAGCGUCAGCAUCGACAAACUGCCGCACGACGGAGG ...((((.....-----------...))))............((((((..((..(((((((((.....)))(((......))).....)))))).)))))))) ( -28.70) >consensus UUCGCACCCACA___________UCCGUGCCACAUUCCUGCUCCUCCGACUCCUUGUGGCGCUAUCAAAGCGUCAGCAUCGACAAACUGCCGCACGACGGAGG ...((((...................))))............((((((..((..(((((((((.....)))(((......))).....)))))).)))))))) (-24.64 = -25.14 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:32 2006