Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,695,967 – 13,696,058 |
Length | 91 |
Max. P | 0.568210 |
Location | 13,695,967 – 13,696,058 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 82.54 |
Mean single sequence MFE | -32.36 |
Consensus MFE | -21.00 |
Energy contribution | -21.17 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.22 |
Mean z-score | -1.82 |
Structure conservation index | 0.65 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568210 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13695967 91 + 23771897 --GGG---------UCUUGCUGGCCAUGUUUUGUCGU-----CGGACUAAGAUGGCUAUCAGCAAAUGGCAACAACAUUCGACGGGUAAACGGAUGG-----CUGAUGCCCA --(((---------(......((((((.((..(((..-----..))).)).))))))((((((...((....)).((((((.........)))))))-----))))))))). ( -33.80) >DroSec_CAF1 103307 91 + 1 --GGG---------UCUUGCUGGCCAUGUUUUGUCGU-----CGGACUAAGAUGGCUAUCAGCAAAUGGCAACAACAUUCGACGGGUAAACGGAUGG-----UUGAUGCUCA --...---------..(((((((((((.((..(((..-----..))).)).)))))...))))))..((((.(((((((((.........))))).)-----))).)))).. ( -28.40) >DroSim_CAF1 113733 91 + 1 --GGG---------UCUUGCUGGCCAUGUUUUGUCGU-----CGGACUAAGAUGGCUAUCAGCAAAUGGCAACAACAUUCGACGGGUAAACGGAUGG-----CUGAUGCCCA --(((---------(......((((((.((..(((..-----..))).)).))))))((((((...((....)).((((((.........)))))))-----))))))))). ( -33.80) >DroEre_CAF1 109325 91 + 1 --GGG---------UCUUGCUGGCCAUGUUUUGUCGU-----CGGACUAAGAUGGCUAUCAGCAAAUGGUAACAACAUUCGACGGGCAAACGAAUGG-----CUCAUGCCCA --(((---------(..((..((((((..((((((((-----((((........(((((......))))).......)))))).))))))...))))-----)))).)))). ( -30.26) >DroYak_CAF1 112691 93 + 1 CUGGG---------UCUUGCCGGCCAUGUUUUGUCGU-----CGGACUAAGAUGGCUAUCGGCAAAUGGUAACAACAUUCGACGGGUGAACGGAUGG-----CUGAUGCCCA ..(((---------(......((((((.((..(((..-----..))).)).))))))((((((...((....)).((((((.........)))))))-----))))))))). ( -30.70) >DroPer_CAF1 94406 112 + 1 AUGGGACUUUGGUUUCUCCCAGGCCAUGUUUUGUUGUGUUGCCUGGCAUUGAUGGCUAUCAGUAAAUGGCAACAACAUUCGAAUGGCAGCUGGAAGGAGGCCCUCAUUAUCA (((((.....(((((((.(((((((((....((((((..((((....((((((....))))))....)))))))))).....)))))..))))..))))))))))))..... ( -37.20) >consensus __GGG_________UCUUGCUGGCCAUGUUUUGUCGU_____CGGACUAAGAUGGCUAUCAGCAAAUGGCAACAACAUUCGACGGGUAAACGGAUGG_____CUGAUGCCCA ..(((...........(((((((((((.((..(((.........))).)).)))))...)))))).((....)).((((((.........))))))............))). (-21.00 = -21.17 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:31 2006