Locus 4938

Sequence ID 3L_DroMel_CAF1
Location 13,694,926 – 13,695,023
Length 97
Max. P 0.888552
window7799

overview

Window 9

Location 13,694,926 – 13,695,023
Length 97
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.13
Mean single sequence MFE -26.93
Consensus MFE -11.41
Energy contribution -10.25
Covariance contribution -1.16
Combinations/Pair 1.27
Mean z-score -2.19
Structure conservation index 0.42
SVM decision value 0.95
SVM RNA-class probability 0.888552
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13694926 97 - 23771897
UU-AU-U-CU------------CCGCUAAUUGCAUUUGAAAAGUGCAUUAAGUUGGGCAUCGAACUGGAUUUUUCGAUGCGGUUA---GUUAGUUAAA-----UAGAUUGAUUAGGGGCA
..-..-.-((------------((((((((((((((.(((((((.((....(((.(....).))))).)))))))))))))))))---))(((((((.-----....))))))))))).. ( -27.70)
>DroPse_CAF1 91732 95 - 1
UUCCAGCCGG------------CCACUAAUUGCAUUUGAAAAGUGCAUUAGGUUA------------GAUUUUUCUCUGUGGUCGGCUGUUGGUUAAAAAUUGUAGAUUGAUUAG-GGCA
...(((((((------------((((((((.(((((.....))))))))))..((------------((......))))))))))))))((((((((..........))))))))-.... ( -28.60)
>DroEre_CAF1 108283 97 - 1
UU-AU-U-CU------------CCGCUAAUUGCAUUUGAAAAGUGCAUUAAGUUGGGCAUCGAACUGGAUUUUUCGCUGCGGUUA---GUUAGUUAAA-----UAGAUUGAUUAGGGGCA
..-..-.-((------------((((((((((((..((((((((.((....(((.(....).))))).)))))))).))))))))---))(((((((.-----....))))))))))).. ( -25.40)
>DroYak_CAF1 111646 97 - 1
UU-AU-U-CU------------CCGCUAAUUGCAUUUGAAAAGUGCAUUAAGUUGGGCAUCGAACUGGAUUUUUCGCUGCGGUUA---GUUAGUUAAA-----UAGAUUGAUUAGGGGCA
..-..-.-((------------((((((((((((..((((((((.((....(((.(....).))))).)))))))).))))))))---))(((((((.-----....))))))))))).. ( -25.40)
>DroAna_CAF1 159605 110 - 1
UUCCC-U-CUUCGCGUUAAAACCCACUAAUUGCAUUUGAAAAGUGCAUUAAGUGGGACAUCGAAACACAUUUUUCUGUGUGGUUA---GUUACUUAAA-----UAGAUUGAUUAAGAGCU
....(-(-(((...(((((..((((((...((((((.....))))))...)))))).........(((((......)))))....---..........-----....))))).))))).. ( -25.90)
>DroPer_CAF1 93174 95 - 1
UUCCAGCCGG------------CCACUAAUUGCAUUUGAAAAGUGCAUUAGGUUA------------GAUUUUUCUCUGUGGUCGGCUGUUGGUUAAAAAUUGUAGAUUGAUUAG-GGCA
...(((((((------------((((((((.(((((.....))))))))))..((------------((......))))))))))))))((((((((..........))))))))-.... ( -28.60)
>consensus
UU_AU_U_CU____________CCACUAAUUGCAUUUGAAAAGUGCAUUAAGUUGGGCAUCGAACUGGAUUUUUCGCUGCGGUUA___GUUAGUUAAA_____UAGAUUGAUUAGGGGCA
.......................(((....((((((.....))))))..(((((.((.......)).)))))......)))(((....(((((((..........)))))))....))). (-11.41 = -10.25 +  -1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:30 2006