Locus 4935

Sequence ID 3L_DroMel_CAF1
Location 13,689,770 – 13,689,867
Length 97
Max. P 0.505188
window7793

overview

Window 3

Location 13,689,770 – 13,689,867
Length 97
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 82.78
Mean single sequence MFE -18.87
Consensus MFE -14.57
Energy contribution -14.68
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -1.33
Structure conservation index 0.77
SVM decision value -0.06
SVM RNA-class probability 0.505188
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13689770 97 - 23771897
CCCAUCAUCUUGCCGCUUUGCGGAAAAAGCGCAAUCAAAGCGGAAAUGAAAUUUGCAGGAAG---UCGAGUAAAAAAAAACAAAAAAAAUGCAAAAUUCU
....((((....((((((((((.......))))....))))))..))))..((((((.....---....((........))........))))))..... ( -18.43)
>DroSec_CAF1 97113 88 - 1
CCCAGCAUCUUGCCGCUUUGCGGAAAAAGCGCAAUCAAAGCGGAAAUGAAAUUUGCAGGAAG---UCGAGUA---AA------AAAAAAUGCGAAAUUCU
....(((((...((((((((((.......))))....))))))....))....)))((((..---(((.((.---..------.....)).)))..)))) ( -18.40)
>DroSim_CAF1 107862 91 - 1
CCCACCAUCUUGCCGCUUUGCGGAAAAAGCGCAAUCAAAGCGGAAAUGAAAUUUGCAGGAAG---UCGAGUAACAAA------AAAAAAUGCAAAAUUCU
............((((((((((.......))))....))))))....(((.((((((.....---............------......)))))).))). ( -18.10)
>DroEre_CAF1 102753 93 - 1
CGC-CCAUCCUGCCGCUUUGCGGAAAAAGCGCAAUCAAAGCGGAAAUGAAAUUUGCAGGAAGUAGUCGAGUAACAACA------AAAAAUGCGAAAUUCU
(((-...(((((((((((((((.......))))....)))))(((......))))))))).((.((......)).)).------......)))....... ( -20.10)
>DroYak_CAF1 106189 89 - 1
-----CAUCUUGCCGCUUUGCGGAAAAAGCGCAAUCAAAGCGGAAAUGAAAUUUGCAGGAAG---UCGAGUAACAAAAA---AAAAAAAUGCUAAAUUCU
-----..((...((((((((((.......))))....))))))....))........((((.---...((((.......---.......))))...)))) ( -15.34)
>DroAna_CAF1 154955 81 - 1
CGCCCAUUCCUGCCGCCCUGCGGAAAAAGCGCAAUCAAAGCGGAAAUGAAAUUUGCAGGAAG---UCGAGGGGAAG----------------GGAAUACU
..(((.(((((..(((((((((((.....(((.......))).........))))))))..)---.))..))))))----------------))...... ( -22.84)
>consensus
CCCACCAUCUUGCCGCUUUGCGGAAAAAGCGCAAUCAAAGCGGAAAUGAAAUUUGCAGGAAG___UCGAGUAACAAA______AAAAAAUGCGAAAUUCU
.......(((((((((((((((.......))))....)))))(((......)))))))))........................................ (-14.57 = -14.68 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:25 2006