Locus 4934

Sequence ID 3L_DroMel_CAF1
Location 13,689,435 – 13,689,530
Length 95
Max. P 0.936937
window7792

overview

Window 2

Location 13,689,435 – 13,689,530
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 96.42
Mean single sequence MFE -29.94
Consensus MFE -28.12
Energy contribution -28.32
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.94
SVM decision value 1.26
SVM RNA-class probability 0.936937
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13689435 95 - 23771897
AUUAGAAAUCACUGAACCGUUUGCAGGAGGUGCCAUUUUGGAGGCGCCCUUUGUCGUGGGCCUAAUCAAAAUUGGACGCCAAAUCUCCGCAUACA
.((((......))))...((.(((.((((((.((.....)).(((((((........))))(((((....)))))..)))..))))))))).)). ( -29.50)
>DroSec_CAF1 96778 95 - 1
AUUAGAAAUCACUGAACCGUUUGCAGGAGGUGCCAUUUCGGAGGCGCCCUUUGUCGUGGGCCUAAUCGAAAUUGGACGCCAAAUCUCCGCAUACA
.((((......))))...((.(((.((((((((((((((((.((.((((........))))))..)))))).))).)))).....)))))).)). ( -30.40)
>DroSim_CAF1 107533 95 - 1
AUUAGAAAUCACUGAACCGUUUGCAGGAGGUGCCAUUUUGGAGGCGCCCUUUGUCGUGGGCCUAAUCGAAAUUGGACGCCAAAUCUCCGCAUACA
.((((......))))...((.(((.((((((.((.....)).(((((((........))))(((((....)))))..)))..))))))))).)). ( -29.50)
>DroEre_CAF1 102424 95 - 1
AUUAGAAAUCAGUGAACCGUUGGCUGGAGGUGCCAUUUUGGAGGCGCCCUUUGUCGUGGGCCUAAUCGAAAUUGGACGCCAAAUCUCCGCAUACA
...(((..(((((.(.....).))))).(((((((.(((.((((.((((........))))))..)).))).))).))))...)))......... ( -26.50)
>DroYak_CAF1 105828 95 - 1
AUUGGAAAUCAGUGAAGCGUUUGCAGGAGGUGCCAUUUUGGAGGCGCCCUUUGUCGUGGGCCUAAUCGAAAUUGGGCGCCAAAUCUCCGCAUACA
..................((.(((.((((((.((.....)).(((((((....(((..........)))....)))))))..))))))))).)). ( -33.80)
>consensus
AUUAGAAAUCACUGAACCGUUUGCAGGAGGUGCCAUUUUGGAGGCGCCCUUUGUCGUGGGCCUAAUCGAAAUUGGACGCCAAAUCUCCGCAUACA
..................((.(((.((((((.((.....)).(((((((........))))(((((....)))))..)))..))))))))).)). (-28.12 = -28.32 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:24 2006