Locus 4933

Sequence ID 3L_DroMel_CAF1
Location 13,686,728 – 13,686,827
Length 99
Max. P 0.571388
window7791

overview

Window 1

Location 13,686,728 – 13,686,827
Length 99
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.82
Mean single sequence MFE -25.78
Consensus MFE -16.65
Energy contribution -17.40
Covariance contribution 0.75
Combinations/Pair 1.14
Mean z-score -1.49
Structure conservation index 0.65
SVM decision value 0.08
SVM RNA-class probability 0.571388
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13686728 99 + 23771897
------------ACUCUCUCCCGCUGUCCGAGCUGGAAAACUUUUCUUUUAGCCGGGUUUUUCCUUCUUUGC--UGCGGUUGACAGCC-------AACAGCGACAACAUUUUAAAGUCGC
------------.((.((..((((.(((((.(((((((........))))))))))..............))--.))))..)).))..-------....(((((...........))))) ( -23.83)
>DroPse_CAF1 82400 112 + 1
CUACUUCUCUU-UCUCUUUUCUGUUGUCCGAGCAUACAAAAUUUUCUUUUAGCCGAGUUUUUCCCACUUGGCUCUGCGGUUGACAGCC-------AACAGCGACAACAUUUUAAGGCCGC
...........-..((((...(((((((......................((((((((.......))))))))..((.((((.....)-------))).)))))))))....)))).... ( -25.20)
>DroSec_CAF1 94036 99 + 1
------------ACUCUCUCCCGCUGUCCGAGCUGGAACACUUUUCUUUUAGCCGGGUUCUUCCUUCUUUGC--UGCGGUUGACAGCC-------AACAGCGACAACAUUUUAAAGUCGC
------------.((.((..((((.(((((.(((((((........))))))))))..............))--.))))..)).))..-------....(((((...........))))) ( -23.53)
>DroEre_CAF1 99757 99 + 1
------------ACUCUCGCCCGCUGUCCGAGCUGAAAAACUUUUCUUUUAGCCGGGUUUUUCCUUCGUUGC--UGCGGUUGACAGCC-------AACAGCGACAACAUUUUAAAGUCGU
------------.........((((.((((.(((((((........)))))))))))..........(((((--((.(((.....)))-------..)))))))..........)).)). ( -25.40)
>DroYak_CAF1 103164 104 + 1
--------------UCUCUGCCGCUGUCCGAGCUGAAAAACUUUUCUUUUAGCCGGGUUUUUCCUUCUUGGC--UGCGCUUGACAGCCAACAGCCAACAGCGACAACAUUUUAAAGUCGC
--------------....((.(((((((((.(((((((........))))))))))............((((--((.(((....)))...)))))))))))).))............... ( -31.50)
>DroPer_CAF1 83705 113 + 1
GUACUUCUCUUUUCUCUUUUCUGUUGUCCGAGCAUACAAAAUUUUCUUUUAGCCGAGUUUUUCCCACUUGGCUCUGCGGUUGACAGCC-------AACAGCGACAACAUUUUAAGGCCGC
..............((((...(((((((......................((((((((.......))))))))..((.((((.....)-------))).)))))))))....)))).... ( -25.20)
>consensus
____________ACUCUCUCCCGCUGUCCGAGCUGAAAAACUUUUCUUUUAGCCGGGUUUUUCCUUCUUGGC__UGCGGUUGACAGCC_______AACAGCGACAACAUUUUAAAGUCGC
......................((((((((.(((((((........)))))))))...............((...))....))))))............(((((...........))))) (-16.65 = -17.40 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:23 2006