Locus 4932

Sequence ID 3L_DroMel_CAF1
Location 13,686,410 – 13,686,524
Length 114
Max. P 0.723336
window7790

overview

Window 0

Location 13,686,410 – 13,686,524
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 91.92
Mean single sequence MFE -31.90
Consensus MFE -27.17
Energy contribution -28.13
Covariance contribution 0.96
Combinations/Pair 1.08
Mean z-score -1.38
Structure conservation index 0.85
SVM decision value 0.41
SVM RNA-class probability 0.723336
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13686410 114 - 23771897
CCAGCCGAAGCGGGACAGUGAGCAUUUUCAUAAAAAUUGCGGCUGUUAAAAUGCUGCGGUCGCUCUUCCUUCAAGCUGUCCAUUCGCCCGCCCCUCGGCUCCACUGCCACCACC
..((((((.(((((..((((..((.(((..........((((((((.........)))))))).........))).))..))))..)))))...)))))).............. ( -35.31)
>DroSec_CAF1 93715 114 - 1
CCAGCCGAAGCGGGACAGCGAGCAUUUUCAUAAAAAUUGCGGCUGUUAAAAUGCUGCGGUCGCUCUUCCUUCAAGCUGUCCAUUCCCCCGCUCCUCGGCUCCACUGCCACCACC
..((((((((((((((((((((....))).........((((((((.........))))))))...........))))).......))))))..)))))).............. ( -37.21)
>DroSim_CAF1 104458 114 - 1
CCAGCCGAAGCGGGACAGCGAGCAUUUUCAUAAAAAUUGCGGCUGUUAAAAUGCUGCGGUCGCUCUUCCUUCAAGCUGUCCAUUCCCCCACCCCACGGCUCCACUGCCUCCACC
......(((...((((((((((....))).........((((((((.........))))))))...........))))))).)))...........(((......)))...... ( -31.80)
>DroEre_CAF1 99424 107 - 1
CCAGCCGAAGCGGGACAGAGAGCAUUUUCAUAAAAAUUGCGGCUGUUAAAAUGCUGCGGUCGCUCUUCCUUCAAGCUGUCCAUUCCCCCGCCCCCUGGCCCCA-------CUGC
...((((..(((((...((.((((((((....))))).((((((((.........))))))))...........))).))......)))))....))))....-------.... ( -29.20)
>DroYak_CAF1 102833 112 - 1
CCAGCCGAAGCGGGACAGAGAGCAUUUUCAUAAAAAUUGCGGCUGUUAAAAUGCUGCGGUCGCUCUUCCUUCAAGCUGUCCAUUCCCCCGCCCCUCG-CCCCU-CGCCACCAAC
.........((((((((((((((.(((....))).((((((((.........)))))))).))))).........))))))........((.....)-)....-)))....... ( -26.00)
>consensus
CCAGCCGAAGCGGGACAGAGAGCAUUUUCAUAAAAAUUGCGGCUGUUAAAAUGCUGCGGUCGCUCUUCCUUCAAGCUGUCCAUUCCCCCGCCCCUCGGCUCCACUGCCACCACC
...(((((.(((((((((((((....))).........((((((((.........))))))))...........))))).......)))))...)))))............... (-27.17 = -28.13 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:22 2006