Locus 4931

Sequence ID 3L_DroMel_CAF1
Location 13,685,029 – 13,685,129
Length 100
Max. P 0.708214
window7789

overview

Window 9

Location 13,685,029 – 13,685,129
Length 100
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 83.25
Mean single sequence MFE -16.95
Consensus MFE -10.41
Energy contribution -11.91
Covariance contribution 1.50
Combinations/Pair 1.08
Mean z-score -2.05
Structure conservation index 0.61
SVM decision value 0.37
SVM RNA-class probability 0.708214
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13685029 100 + 23771897
CUAAAAGUACAAAAAUCCGCUUAGAUAACUGGGCUUAAUCUUAUAAAAUACAUAAGCCUAGCUUAGAUAACGAGCUUCUUUAUUAU---AUAAUAGAUAGCUU
.................((.(((..((((((((((((...............))))))))).)))..)))))((((..((((((..---..)))))).)))). ( -18.76)
>DroSec_CAF1 92312 100 + 1
CUAACAAGUCAAAAAUCCGCUUAGAUAACUGGGUUUAAUCUUAUAAAAUUCAUAAGCCUAGCUUAGAUAACUAGCUUCUAUAUUAU---AUAAUAGAUAGCUU
....................(((..((((((((((((...............))))))))).)))..)))..(((((((((.....---...))))).)))). ( -16.06)
>DroSim_CAF1 103051 100 + 1
CUAACAAGUCAAAAAUCCGCUUAGAUAACUAGGCUUAAUCUUAUAAAAUACAUAAGCCUAGCUUAGAUAACUAGCUUCUAUAUUAU---AUAUUAGAUAGCUU
....................(((..((((((((((((...............))))))))).)))..)))..((((((((......---....)))).)))). ( -17.36)
>DroYak_CAF1 101452 92 + 1
CUAUUAAGAGAACAAUCCGUUUAGAUAAC-------UAUCUUAUAAUAUAGAUAAU----GCUUAGAUAACCAGCUUCUAUAUUAUACAAUUAUAGAUAGCUU
.........((((.....))))......(-------((((((((((((((((....----(((.........))).))))))))))).......))))))... ( -15.61)
>consensus
CUAACAAGACAAAAAUCCGCUUAGAUAACUGGGCUUAAUCUUAUAAAAUACAUAAGCCUAGCUUAGAUAACUAGCUUCUAUAUUAU___AUAAUAGAUAGCUU
....................(((..((((((((((((...............))))))))).)))..)))..(((((((((...........))))).)))). (-10.41 = -11.91 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:21 2006