Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,683,115 – 13,683,235 |
Length | 120 |
Max. P | 0.627924 |
Location | 13,683,115 – 13,683,235 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.44 |
Mean single sequence MFE | -28.83 |
Consensus MFE | -25.96 |
Energy contribution | -25.68 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.12 |
Mean z-score | -1.16 |
Structure conservation index | 0.90 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627924 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13683115 120 + 23771897 CUUGCAUUUCUUGCUGCGGCCAGCAGAAAGUUUUGUUAAUUGAGUUUGUUGAAAGUUUUAUUAAACAGAGCGACAGCCGCAUUCAAGUUUUCCAGAAUUUAAAGCCGCAAAAGUCGACUU ...(((.....)))((((((.((((((....))))))..((((((((...((((((((....))))...(((.....)))........))))..)))))))).))))))........... ( -26.80) >DroPse_CAF1 78829 120 + 1 CUUGCAUUUCUUGCUGCGGCUAGCAAAAACUUUUGUUAAUUGAGUUUGUUGAAAGUUUUAUUAAACAGAGCGACAGCCGCAUUCAAGUUUUCCAGAAUUUAAAGCCGCAAAAGUCGACUU ...(((.....)))(((((((((((((....))))))).((((((((...((((((((....))))...(((.....)))........))))..)))))))).))))))........... ( -28.30) >DroEre_CAF1 95828 120 + 1 CUUGCAUUUCUUGCUGCGGCCAGCGGAAAGUUUUGUUAAUUGAGUUUGUUGAAAGUUUUAUUAAACAGAGCGACAGCCGCAUUCAAGUUCUCCAGAAUUUAAAGCCGCAAAAGUCGACUU ...(((.....)))((((((..((((...(((((((((((.((..((.....))..)).))).)))))))).....))))....((((((....))))))...))))))........... ( -32.40) >DroYak_CAF1 99493 120 + 1 CUUGCAUUUCUUGCUGCGGCCAGCAGAAAGUUUUGUUAAUUGAGUUUGUUGAAAGUUUUAUUAAACAGAGCGACAGCCGCAUUCAAGUUUUCCAGAAUUUAAAGCCGCAAAAGUCGACUU ...(((.....)))((((((.((((((....))))))..((((((((...((((((((....))))...(((.....)))........))))..)))))))).))))))........... ( -26.80) >DroAna_CAF1 147056 119 + 1 CUUGCAUUUCUUGCUGUGGCCAGCAGAAAGUUCUGUUAAUUGAGUUUGUUGAAAGUUUUAUUAAACAGAGCGACAGCCGCAUUCAAGUUUUGCAGA-UUUAAAGCCACAAAAGUCAACUU ...(((.....)))((((((.((((((....))))))..((((((((((.(((.((((....))))...(((.....))).......))).)))))-))))).))))))........... ( -30.40) >DroPer_CAF1 80045 120 + 1 CUUGCAUUUCUUGCUGCGGCUAGCAAAAACUUUUGUUAAUUGAGUUUGUUGAAAGUUUUAUUAAACAGAGCGACAGCCGCAUUCAAGUUUUCCAGAAUUUAAAGCCGCAAAAGUCGACUU ...(((.....)))(((((((((((((....))))))).((((((((...((((((((....))))...(((.....)))........))))..)))))))).))))))........... ( -28.30) >consensus CUUGCAUUUCUUGCUGCGGCCAGCAGAAAGUUUUGUUAAUUGAGUUUGUUGAAAGUUUUAUUAAACAGAGCGACAGCCGCAUUCAAGUUUUCCAGAAUUUAAAGCCGCAAAAGUCGACUU ...(((.....)))((((((.((((((....))))))..((((((((...((((((((....))))...(((.....)))........))))..)))))))).))))))........... (-25.96 = -25.68 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:20 2006