| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,385,297 – 1,385,397 |
| Length | 100 |
| Max. P | 0.507277 |
| Location | 1,385,297 – 1,385,397 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 88.56 |
| Mean single sequence MFE | -31.38 |
| Consensus MFE | -28.30 |
| Energy contribution | -27.88 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.90 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.507277 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1385297 100 - 23771897 ----AAUCCA---CA------UAAGUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGACUUGCGAUUCGUCGC ----......---..------......(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))))...((((....)))) ( -31.30) >DroSec_CAF1 40592 100 - 1 ----AGUCCA---CA------GAAGUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGACUUAAGUCCGGUCGC ----.(.(((---(.------.(((..(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....))))))))))..))..)).).. ( -31.40) >DroSim_CAF1 38011 100 - 1 ----AGUACA---CA------GAAGUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGACUUAAGUUCGGUCGC ----.(.((.---..------(((.(((((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))))...)).))).))).. ( -30.50) >DroEre_CAF1 41806 104 - 1 AUGUAGUCCA---CA------CAAGUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGACUUGAGAUUCGUCGC (((.((((..---..------((((..(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....))))))))))).)))))))... ( -31.80) >DroYak_CAF1 43401 100 - 1 ----UGUCCA---CA------GAAGUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGACUUGAGACUCGUCGC ----.(((((---.(------(.....(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....))))))))))).)))....... ( -30.00) >DroAna_CAF1 41995 109 - 1 ----AAUCCAUUACUGAAUUGUAUGUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGAUAUGGAAUCCCUAGC ----..((((((((......)))....(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....))))))).)))))......... ( -33.30) >consensus ____AGUCCA___CA______GAAGUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGACUUGAGAUCCGUCGC ......................(((..(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....))))))))))............ (-28.30 = -27.88 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:27 2006