Locus 4928

Sequence ID 3L_DroMel_CAF1
Location 13,681,186 – 13,681,276
Length 90
Max. P 0.948605
window7784

overview

Window 4

Location 13,681,186 – 13,681,276
Length 90
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 77.43
Mean single sequence MFE -30.48
Consensus MFE -21.68
Energy contribution -23.24
Covariance contribution 1.56
Combinations/Pair 1.16
Mean z-score -1.95
Structure conservation index 0.71
SVM decision value 1.38
SVM RNA-class probability 0.948605
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13681186 90 - 23771897
--------GCUACAGAAUGUCAGUGCGAGGCGCUGACAUUAUUUGGCUGUUUUAUGAAUUUUGUGGCUUUCACUUUGGGGCCAGGA-------GCCAGGAUCGCU
--------((.....(((((((((((...))))))))))).(((((((.(.............(((((((......)))))))).)-------))))))...)). ( -29.91)
>DroSec_CAF1 88438 98 - 1
AUACAGCAGCUACAGAAUGUCAGUGCGAGGCGCUGACAUUAUUUGGCUGUUUUAUGAAUUUUGUGGCUUUCACUUUGGGGCCAGGA-------GCCAGGAUCGCU
(((.((((((((...(((((((((((...)))))))))))...)))))))).))).....((.((((((.....(((....)))))-------)))).))..... ( -36.10)
>DroSim_CAF1 99043 105 - 1
AUACAGCAGCUACAGAAUGUCAGUGCGAGGCGCUGACAUUAUUUGGCUGUUUUAUGAAUUUUGUGGCUUUCACUUUGGGGCCAGGAGCCAGGAGCCAGGAUCGCU
(((.((((((((...(((((((((((...)))))))))))...)))))))).))).....((.(((((((........(((.....))).))))))).))..... ( -38.70)
>DroEre_CAF1 93810 82 - 1
--------GCUACAGAAUGUCAGUGCGAGGCGCUGACAUUAUUUGGCUGUUUUAUGAAUUUUGUGGCUUUCACUUUGGGGCCAGGC--------------G-ACA
--------((((...(((((((((((...)))))))))))...))))................(((((((......)))))))(..--------------.-.). ( -27.10)
>DroAna_CAF1 133828 85 - 1
---CUCCA---ACUAGAUUUUGGUAAGCGGCGCUGACAUUAUUUGGCUGUAUUUUUAGUUUUGUGGCUUCCACACUGGGGACAGG--------------AUCGCU
---.....---....((((.(((.((((.(((((((...(((......)))...)))))...)).)))))))..(((....))))--------------)))... ( -20.60)
>consensus
___C__CAGCUACAGAAUGUCAGUGCGAGGCGCUGACAUUAUUUGGCUGUUUUAUGAAUUUUGUGGCUUUCACUUUGGGGCCAGGA_______GCCAGGAUCGCU
......((((((...(((((((((((...)))))))))))...))))))............(.(((((((......))))))).).................... (-21.68 = -23.24 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:16 2006