Locus 4927

Sequence ID 3L_DroMel_CAF1
Location 13,680,693 – 13,680,793
Length 100
Max. P 0.570353
window7783

overview

Window 3

Location 13,680,693 – 13,680,793
Length 100
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 85.00
Mean single sequence MFE -18.63
Consensus MFE -14.54
Energy contribution -15.57
Covariance contribution 1.03
Combinations/Pair 1.05
Mean z-score -1.82
Structure conservation index 0.78
SVM decision value 0.07
SVM RNA-class probability 0.570353
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13680693 100 - 23771897
--------CCCA----UCCAUCUGCAAUUGCCAUGGCAACACUGUAUGUAGCCAGCUGUCAGCGCAAACGCCCACAAACUGUCAAAUUCAUCAAAAUCACACGAUUGCAACC
--------....----......((((((((...((((.(((.....))).))))..(((..(((....)))..))).........................))))))))... ( -20.20)
>DroPse_CAF1 76088 93 - 1
-------------------UGCCACAAUUGCCAUGGCAACUCUGUCUGUAGCCAGCUGUCAGCGCAAACGCCCACAAACUGUCAAAUUCAUCAAAAUCACACGAAUGCAACC
-------------------........((((..((((.((.......)).))))..(((..(((....)))..)))..............................)))).. ( -13.60)
>DroSec_CAF1 87923 110 - 1
CA--CCCACACAUAUAACCAUCUGCAAUUGCCAUGGCAACACUGUAUGUAGGCGGCUGUCAGCGCAAACGCCCACAAACUGUCAAAUUCAUCAAAAUCACACGAUUGCAACC
..--..................((((((((...((....))..((.(((.((((..(((....)))..)))).))).))......................))))))))... ( -23.80)
>DroEre_CAF1 93292 111 - 1
CA-ACCAAUACAUAUAACCAUAUGCAAUUGCCAUGGCAACACUGUAUGUAGCCAGCUGUCAGCGCAAACGCCCACAAACUGUCAAAUUCAUCAAAAUCACACGAUUGCAACC
..-...................((((((((...((((.(((.....))).))))..(((..(((....)))..))).........................))))))))... ( -20.40)
>DroYak_CAF1 96902 112 - 1
CAAACCCAUACAUACAACCAUCUGCAAUUGCCAUGGCAACACUGUAUGUAGCCAGCUGUCAGCGCAAACGCCCACAAACUGUCAAAUUCAUCAAAAUCACACGAUUGCAACC
......................((((((((...((((.(((.....))).))))..(((..(((....)))..))).........................))))))))... ( -20.20)
>DroPer_CAF1 77382 93 - 1
-------------------UGCCACAAUUGCCAUGGCAACUCUGUCUGUAGCCAGCUGUCAGCGCAAACGCCCACAAACUGUCAAAUUCAUCAAAAUCACACGAAUGCAACC
-------------------........((((..((((.((.......)).))))..(((..(((....)))..)))..............................)))).. ( -13.60)
>consensus
_________ACA____ACCAUCUGCAAUUGCCAUGGCAACACUGUAUGUAGCCAGCUGUCAGCGCAAACGCCCACAAACUGUCAAAUUCAUCAAAAUCACACGAUUGCAACC
......................((((((((...((((.((.......)).))))..(((..(((....)))..))).........................))))))))... (-14.54 = -15.57 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:15 2006