Locus 4926

Sequence ID 3L_DroMel_CAF1
Location 13,679,916 – 13,680,024
Length 108
Max. P 0.994371
window7782

overview

Window 2

Location 13,679,916 – 13,680,024
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -21.18
Consensus MFE -20.42
Energy contribution -20.10
Covariance contribution -0.32
Combinations/Pair 1.06
Mean z-score -1.92
Structure conservation index 0.96
SVM decision value 2.47
SVM RNA-class probability 0.994371
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13679916 108 + 23771897
AAACAAAAUUAGCUUUUGGCAAAUAUGUGGUGUUCACUGCGAGCUCUCUUCAAAGGACUGCCAAACUAAUUUAAGCCCAAAUUAAAGUUCAUUUAAUUAGCUACAACA
.....(((((((..((((((.....((..((....))..))((..((......))..))))))))))))))).(((...(((((((.....))))))).)))...... ( -21.50)
>DroSec_CAF1 87161 108 + 1
AAACAAAAUUAGCUUUUGGCAAAUAUGUGGUGUUCACUGCGAACUCUCUUCAAAGGACUGCCAAACUAAUUUAAGCCCAAAUUAAAGUUCAUUUAAUUAGCUACAACA
.....(((((((..(((((((.....(..((....))..)(((.....))).......)))))))))))))).(((...(((((((.....))))))).)))...... ( -20.80)
>DroSim_CAF1 97766 108 + 1
AAACAAAAUUAGCUUUUGGCAAAUAUGUGGUGUUCACUGCGAGCUCUCUUCAAAGGACUGCCAAACUAAUUUAAGCCCAAAUUAAAGUUCAUUUAAUUAGCUACAACA
.....(((((((..((((((.....((..((....))..))((..((......))..))))))))))))))).(((...(((((((.....))))))).)))...... ( -21.50)
>DroEre_CAF1 92492 108 + 1
AAACAAAAUUAGCUUUUGGCAAAUAUGUGGUGUUCAUUGCGAGCUCUCUUCAAAGGACUGCCAAACUAAUUUAAGCCCAAAUUAAAGUUCAUUUAAUUAGCUACAACA
.....(((((((..((((((.....((..((....))..))((..((......))..))))))))))))))).(((...(((((((.....))))))).)))...... ( -20.20)
>DroYak_CAF1 96087 108 + 1
AAACAAAAUUAGCUUUUGGCAAAUAUGUGGCGCUCAUUGCGAGCUCUCUUCAAAGGACUGCCAAACUAAUUUAAGCCCAAAUUAAAGUUCAUUUAAUUAGCUACAACA
.....(((((((..(((((((..........((((.....))))..(((.....))).)))))))))))))).(((...(((((((.....))))))).)))...... ( -21.90)
>consensus
AAACAAAAUUAGCUUUUGGCAAAUAUGUGGUGUUCACUGCGAGCUCUCUUCAAAGGACUGCCAAACUAAUUUAAGCCCAAAUUAAAGUUCAUUUAAUUAGCUACAACA
.....(((((((..(((((((......(((.((((.....)))).....)))......)))))))))))))).(((...(((((((.....))))))).)))...... (-20.42 = -20.10 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:14 2006