Locus 4925

Sequence ID 3L_DroMel_CAF1
Location 13,678,742 – 13,678,834
Length 92
Max. P 0.515349
window7781

overview

Window 1

Location 13,678,742 – 13,678,834
Length 92
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 86.83
Mean single sequence MFE -28.62
Consensus MFE -22.38
Energy contribution -21.94
Covariance contribution -0.44
Combinations/Pair 1.22
Mean z-score -1.46
Structure conservation index 0.78
SVM decision value -0.04
SVM RNA-class probability 0.515349
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13678742 92 - 23771897
UUUUAAAUUUCACUCGAGCUAGCCAUUUAAAUUCGGCUUCGAGUGGCCA----------GAAGUUAGCGAGAGCC---GGUGACAGGACAUGGUAAUUUAAGCAC
.((((((((.(((((((...((((..........)))))))))))((((----------...(((.((....)).---(....)..))).))))))))))))... ( -27.10)
>DroSec_CAF1 86050 92 - 1
UUUUAAAUUUCAUUCGAGCUAGCCAUUUAAAUUCGGCUUCGAGUGGCCA----------GGAGUUGGCGAGAGCC---GGUGACAGGACAUGGUAAUUUAAGCAC
.((((((((.(((((((...((((..........)))))))))))((((----------...((((((....)))---(....)..))).))))))))))))... ( -28.80)
>DroSim_CAF1 96645 92 - 1
UUUUAAAUUUCAUUCGAGCUAGCCAUUUAAAUUCGGCUUCGAGUGGCCA----------GGAGUUGGCGAGAGCC---GGUGACAGGACAUGGUAAUUUAAGCAC
.((((((((.(((((((...((((..........)))))))))))((((----------...((((((....)))---(....)..))).))))))))))))... ( -28.80)
>DroEre_CAF1 91269 102 - 1
UUUUAAAUUUCAUUCGAGCUAGCCAUUUAAAUUCGGCUAUGAGUGGCCAGAAGUUGGCGGGAGUUGGCAGUAGCC---GGUGACAGGACAUGGUAAUUUAAGCAC
.((((((((.((((((...(((((..........)))))))))))((((...((..((....))..))....(((---(....).)).).))))))))))))... ( -27.80)
>DroYak_CAF1 94824 105 - 1
UUUUAAAUUUCAUUCGAGCUAGCCAUUUAAAUUCGGCUAUGGGUGACCGGGAGUGGCCAGGAGUUGGCGGUAGUCGGCGGUGACAGGACAUGGUAAUUUAAGCAC
.((((((((.(((((....(((((..........)))))(((....))).)))))((((...((((((....))))))(....)......))))))))))))... ( -30.60)
>consensus
UUUUAAAUUUCAUUCGAGCUAGCCAUUUAAAUUCGGCUUCGAGUGGCCA__________GGAGUUGGCGAGAGCC___GGUGACAGGACAUGGUAAUUUAAGCAC
.((((((((.(((((((...((((..........)))))))))))((((................(((....)))...(....)......))))))))))))... (-22.38 = -21.94 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:13 2006