Locus 4924

Sequence ID 3L_DroMel_CAF1
Location 13,677,988 – 13,678,080
Length 92
Max. P 0.573853
window7780

overview

Window 0

Location 13,677,988 – 13,678,080
Length 92
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.88
Mean single sequence MFE -17.45
Consensus MFE -10.60
Energy contribution -10.63
Covariance contribution 0.03
Combinations/Pair 1.08
Mean z-score -1.50
Structure conservation index 0.61
SVM decision value 0.08
SVM RNA-class probability 0.573853
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13677988 92 - 23771897
--------------CAGGACCACUCACAGGAUCC--UCACU----CACUCUC--------UCGCUGGGAAUCCUCUUGUGUCCUUCAAGCCACAAGCCGGUAACCAAUGAAAACUCAACU
--------------.((((((.......)).)))--)....----.......--------(((.(((..(((..((((((.(......).))))))..)))..))).))).......... ( -18.90)
>DroSec_CAF1 85283 92 - 1
--------------CAGGUCCACUCACAGGAUCC--UCACU----CACUCUC--------UCGCUGGGAAUCCUCUUGUGUCCUUCAAGCCACAAGCCGGUAACCAAUGAAAACUCAACU
--------------..(((((.......))))).--.....----.......--------(((.(((..(((..((((((.(......).))))))..)))..))).))).......... ( -19.10)
>DroSim_CAF1 95877 92 - 1
--------------CAGGUCCACUCACAGGAUCC--UCACU----CACUCUC--------UCGCUGGGAAUCCUCUUGUGUCCUUCAAGCCACAAGCCGGUAACCAAUGAAAACUCAACU
--------------..(((((.......))))).--.....----.......--------(((.(((..(((..((((((.(......).))))))..)))..))).))).......... ( -19.10)
>DroEre_CAF1 90582 80 - 1
--------------CAGUCCCACUCACAGGAUCC--UC------------------------GCUGGGAAUCCUCUUGUGUCCUUCAAGCCGCAAGCCGGUAACCAAUGAAAACUCAACU
--------------..((((........))))..--((------------------------(.(((..(((..((((((.(......).))))))..)))..))).))).......... ( -15.90)
>DroYak_CAF1 94077 110 - 1
ACCAGUCCCACUCCCAGUUCCACUCACAGGAUCC--UCACUCGCUCACUCUC--------UGGCUGGGAAUCCUCUUGUGUCCUUCAAGCCACAAGCCGGUAACCAAUGAAAACUCAACU
(((..(((((...((((.(((.......)))...--...............)--------))).))))).....((((((.(......).))))))..)))................... ( -19.71)
>DroPer_CAF1 74408 87 - 1
-----------------------------GAUCCGUUCUCU----CACUCUCCCACAAUAUCCCUGUGUAUCCUCUUGUGUCCUUCAAGCCACAAGCCGGUAACCAACGAAAACUCAACU
-----------------------------....((((....----........((((.......))))((((..((((((.(......).))))))..))))...))))........... ( -12.00)
>consensus
______________CAGGUCCACUCACAGGAUCC__UCACU____CACUCUC________UCGCUGGGAAUCCUCUUGUGUCCUUCAAGCCACAAGCCGGUAACCAAUGAAAACUCAACU
................................................................(((..(((..((((((.(......).))))))..)))..))).............. (-10.60 = -10.63 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:12 2006