Locus 4922

Sequence ID 3L_DroMel_CAF1
Location 13,673,587 – 13,673,680
Length 93
Max. P 0.828286
window7777

overview

Window 7

Location 13,673,587 – 13,673,680
Length 93
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 78.91
Mean single sequence MFE -27.40
Consensus MFE -20.17
Energy contribution -22.15
Covariance contribution 1.98
Combinations/Pair 1.13
Mean z-score -1.47
Structure conservation index 0.74
SVM decision value 0.71
SVM RNA-class probability 0.828286
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13673587 93 + 23771897
------------UUUUUCCCUCGUCUGUG----UGUUAGCUGGCCAAAUGCAACAGGCGCAACGAGGCCAAUUUGCUUGACAUAUUUGGUCGGCGAACCCGAAACUAAA
------------..........((...((----.(((.((((((((((((...(((((((......))......)))))...)))))))))))).))).))..)).... ( -24.70)
>DroSec_CAF1 80945 91 + 1
------------UUUUUCCCUCGGCUGU------GUUCGCUGGCCAAAUGCAACAGGCGCAACGAGGCCAAUUUGCUUGACAUAUUUGGUCGGGGAACCCGAAACUAAA
------------........((((....------((((.(((((((((((...(((((((......))......)))))...))))))))))).))))))))....... ( -29.40)
>DroSim_CAF1 91123 91 + 1
------------UUUUUCCCUCGGCUGU------GUUCGCUGGCCAAAUGCAACAGGCGCAACGAGGCCAAUUUGCUUGACAUAUUUGGUCGGCGAACCCGAAACUAAA
------------........((((....------((((((((((((((((...(((((((......))......)))))...))))))))))))))))))))....... ( -33.50)
>DroEre_CAF1 86160 97 + 1
------------UUUUUCCCUUGUUUGUGCUCGCGUUCGCUGGCCAAAUGCAACAGGCGCAACGAGGCCAAUUUGCUUGACAUAUUUGGUCGGCGAACCCGAAACUAAA
------------..............((..(((.((((((((((((((((...(((((((......))......)))))...)))))))))))))))).))).)).... ( -34.20)
>DroYak_CAF1 89575 96 + 1
------------UUUUUCCCUGCUGUGUCUU-CUGCUCGCCGGCCAAAUGCAACAGGCGCAACGAGGCCAAUUUGCUUGACAUAUUUGGUCGGCGAACCCGAAACUAAA
------------..((((...((.(......-).))((((((((((((((...(((((((......))......)))))...))))))))))))))....))))..... ( -29.30)
>DroAna_CAF1 127522 104 + 1
UGGUCCAAAAAAGUUUUCCUUACUCU----U-UUUCGUACAAAACAAAUUCAACAGGCGUAAUAGGGCUAAUUUUCUUGACACAUUUCGGCAGAGGACCCGUAACAGAA
.(((((......(((((...(((...----.-....))).)))))..........(((........))).........................))))).......... ( -13.30)
>consensus
____________UUUUUCCCUCGUCUGU_____UGUUCGCUGGCCAAAUGCAACAGGCGCAACGAGGCCAAUUUGCUUGACAUAUUUGGUCGGCGAACCCGAAACUAAA
..................................((((((((((((((((...(((((((......))......)))))...))))))))))))))))........... (-20.17 = -22.15 +   1.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:09 2006