Locus 4921

Sequence ID 3L_DroMel_CAF1
Location 13,673,472 – 13,673,576
Length 104
Max. P 0.778483
window7776

overview

Window 6

Location 13,673,472 – 13,673,576
Length 104
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 89.25
Mean single sequence MFE -27.60
Consensus MFE -20.96
Energy contribution -21.36
Covariance contribution 0.40
Combinations/Pair 1.10
Mean z-score -1.86
Structure conservation index 0.76
SVM decision value 0.55
SVM RNA-class probability 0.778483
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13673472 104 + 23771897
UCAUUGGGUUUAAUUUGUGCGUGGG-----CCACAGUUACUCGGUAGCUGAUUUAUUUAGUUCCAUUCUUGGCCUCUUGGCUCCGGCAUUUCGUUACCCGUAGUCCUAC
.....((((.......((((.((((-----((((((((((...)))))))............(((....))).....)))).)))))))......)))).......... ( -29.12)
>DroSec_CAF1 80830 104 + 1
UCAUUGGGUUUAAUUUGUGCGUGGG-----CCACAGUUACUCGGUAGCUGAUUUAUUUAGUUCCUUUCUUGGCCUUUUGGCUCCGGCAUUUCGUUACCCUCAGUCCUAC
..((((((..((((..((((.((((-----((((((((((...)))))))............((......)).....)))).)))))))...))))..))))))..... ( -28.50)
>DroSim_CAF1 91008 104 + 1
UCAUUGGGUUUAAUUUGUGCGUGGG-----CCACAGUUACUCGGUAGCUGAUUUAUUUAGAUCCUUUCUUGGCCUUUUGGCUCUGGCAUUUCGUUACCCUCAGUCCUAC
..((((((..((((..((((..(((-----((((((((((...)))))))............((......)).....))))))..))))...))))..))))))..... ( -28.40)
>DroEre_CAF1 86040 109 + 1
UCAUUGGGUUUAAUUUGUGCGUGGGCCAGGCCACAGUUACUCGGUAGCUGAUUUAUUUAGUUCCUUUCUUGGCCUUUUGGCUCCGGCAUUUCGUUACCCUCAGUCCUAC
..((((((..((((..((((.((((((((((((.((......((.((((((.....))))))))...)))))))...)))).)))))))...))))..))))))..... ( -35.10)
>DroAna_CAF1 127140 103 + 1
UCAUUGGGUUUAAUUUGAGCAUGGA-----CCACUCUUACUCGGUAGCUGAUUUAUUUAGUUCAUUUUCUGACCUCUUGGUUCUGGCAUUUAGUUAAC-UUAUUCUUAA
....((((((.((((.((((..(((-----(((.......((((.((((((.....))))))......)))).....))))))..)).)).)))))))-)))....... ( -16.90)
>consensus
UCAUUGGGUUUAAUUUGUGCGUGGG_____CCACAGUUACUCGGUAGCUGAUUUAUUUAGUUCCUUUCUUGGCCUUUUGGCUCCGGCAUUUCGUUACCCUCAGUCCUAC
..((((((..((((..((((((((......)))).......(((.((((((.....))))))........((((....)))))))))))...))))..))))))..... (-20.96 = -21.36 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:08 2006