| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,669,446 – 13,669,559 |
| Length | 113 |
| Max. P | 0.756989 |
| Location | 13,669,446 – 13,669,559 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 81.06 |
| Mean single sequence MFE | -23.32 |
| Consensus MFE | -16.86 |
| Energy contribution | -16.18 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756989 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13669446 113 - 23771897 U--CUGGCAAUAACCUGAUUUCAGAAUCAAAUGAAAAUGGCAUCUAUAAAGCUACAGGCGACUGUGAAAAUCACAGAUGCUUCAGAAAAGUACGCUUGUA-AAAUAAAUGUUAUAU- (--(.((......)).))(((((........)))))(((((((.(((.....((((((((.(((((.....))))).(((((.....)))))))))))))-..))).)))))))..- ( -27.00) >DroSec_CAF1 76839 110 - 1 U--CUUGCAAUAACCUGACAUCAG---UAAAUGAAAAUGGCAUCGAUAACGCCACAGGCGACUGUGAAACUUACAGAUGCUUCAGAAAACUUCGCUUGUA-AAAUAUAUGUUAUAU- .--.((((((....(((....)))---....(((....((((((..(((...(((((....)))))....)))..)))))))))...........)))))-)..............- ( -21.40) >DroSim_CAF1 86981 110 - 1 U--CUUGCAAUAACCUGACAUCAG---UAAAUGAAAAUGGCAUCGAUAACGCCACAGGCGUCUGUGAAAAUUACAGAUGCUACAAAAAACUUCGCUUGUA-AAAUAUAUGUUAUAU- .--.((((((....(((....)))---.....(((..((((.........))))..(((((((((((...))))))))))).........)))..)))))-)..............- ( -23.70) >DroYak_CAF1 85349 114 - 1 UCAUAUGGAAUAAUCUGGCAAUAG---CAAAUAAAAAUGGCAUUGAUAAAGCCACAGGCGACUGUGAAAGUUGCAGAUGCUGCCGAAAACUGCACAGGAGGAAGUAAAUGUUAUAAA .............(((((((.(((---((........((((.........))))...((((((.....))))))...)))))........))).))))................... ( -21.20) >consensus U__CUUGCAAUAACCUGACAUCAG___CAAAUGAAAAUGGCAUCGAUAAAGCCACAGGCGACUGUGAAAAUUACAGAUGCUUCAGAAAACUUCGCUUGUA_AAAUAAAUGUUAUAU_ .........((((((((....)))..............((((((..(((...(((((....)))))....)))..))))))............................)))))... (-16.86 = -16.18 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:55 2006