Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,668,621 – 13,668,717 |
Length | 96 |
Max. P | 0.598046 |
Location | 13,668,621 – 13,668,717 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 83.01 |
Mean single sequence MFE | -33.42 |
Consensus MFE | -21.31 |
Energy contribution | -21.62 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.14 |
Mean z-score | -1.76 |
Structure conservation index | 0.64 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598046 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13668621 96 - 23771897 --GACCGGCU--GAAUAUGCUGCUCGGAGUGAUGAGAUGGGUUCUGCUUCUAGCUCUAGCUUUUAAGAGCAACUCAUUUAAAGCCCUGGGAGCAGGA----------CAA --..(((((.--......))).((((......))))..))(((((((((((((.....(((((.(((((...))).)).))))).))))))))))))----------).. ( -30.90) >DroSec_CAF1 76014 96 - 1 --GACCGGCU--GAAUAUGCUGCUCGGAGUGAUGAGAUGGGUUCUGCUUCUAGCUCUAGCUUUUAAGAGCAACUCAUUUAAAGCCCUGGGAGCAGGG----------CAG --((.((((.--......)))).)).........((((((((..(((((..(((....))).....)))))))))))))...((((((....)))))----------).. ( -33.20) >DroEre_CAF1 81158 95 - 1 GAGACCGGCU--GAAUAUGCUCCUCGAAGUGAUGAGUUGGGUGCUGCUUCUAGCUCUAGCUUUUAGGAGCAACUCAUUUAAAGCCCCGGGAGCGGG-------------A ......((((--((((.(((((((.(((((...((((((((.......))))))))..))))).)))))))....))))..))))(((....))).-------------. ( -36.00) >DroYak_CAF1 84409 108 - 1 --GACCGGCGGAGAAUAUGCUUCUCGAAGUGAUGAGAUGGAGCCUGUUUCUAGCUCUAGCUUUUAAGAGCAGCUCAUUUAAAGCCCGAGCAGCAGGAGCAACUGCAGCAA --..(.(((.(((((.....))))).....((((((.((((((.........))))))((((....))))..))))))....))).).((.((((......)))).)).. ( -33.60) >consensus __GACCGGCU__GAAUAUGCUGCUCGAAGUGAUGAGAUGGGUUCUGCUUCUAGCUCUAGCUUUUAAGAGCAACUCAUUUAAAGCCCUGGGAGCAGGA__________CAA ....(((((.........))).((((......))))..))..(((((((((((.....(((((...(((...)))....))))).))))))))))).............. (-21.31 = -21.62 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:50 2006