Locus 4912

Sequence ID 3L_DroMel_CAF1
Location 13,665,908 – 13,666,024
Length 116
Max. P 0.662603
window7751

overview

Window 1

Location 13,665,908 – 13,666,024
Length 116
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.70
Mean single sequence MFE -21.83
Consensus MFE -12.67
Energy contribution -13.62
Covariance contribution 0.94
Combinations/Pair 1.08
Mean z-score -1.72
Structure conservation index 0.58
SVM decision value 0.27
SVM RNA-class probability 0.662603
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13665908 116 - 23771897
GGACAAAAAUUACAAGUCCU----UCCACUUCCACUUGCUCCCGGUUUGAAAUGCUCUCCAUGAGCUAUGCGCACGCAUAAACAAUAAAUAAGGCUUCAUAAUUUUCCUUCAUUGAACUU
(((..(((((((.(((.(((----(............((((..((...((.....)).))..))))(((((....)))))..........)))))))..)))))))..)))......... ( -20.30)
>DroPse_CAF1 59467 96 - 1
GAGCCAAAAUUACAUGGCCU---------U---------UC----UCUGC--AGCUCUGCAAGAGCUAUGCGCACGCAUAAACAAUAAAUAAGGCUUCAUAAUUUUCCUUCAUUGAACUU
(((..(((((((...(((((---------(---------.(----(((((--(....))).)))).(((((....)))))..........))))))...)))))))..)))......... ( -23.70)
>DroEre_CAF1 78413 116 - 1
GGAUAAAAAUUACAAGUCCU----CCCACUUCCACGUGCUCCCGGCCAGAAACGCGCUCCAUGAGCUAUGCGCACGCAUAAACAAUAAAUAAGGCUUCAUAAUUUUCCUUCAUUGAACUU
(((..(((((((........----..(((......))).....((((........((((...))))(((((....)))))............))))...)))))))..)))......... ( -19.60)
>DroYak_CAF1 81651 116 - 1
GGACAAACAUUACAAGUCCU----UUCACUUCCACUUGCAGCCGCUCUGAAAUGCUCUCCAUGAGCUAUGCGCACGCAUAAACAAUAAAUAAGGCUUCAUAAUUUUCCUUCAUUGAACUU
((((...........)))).----............((.((((..........((((.....))))(((((....)))))............)))).))..................... ( -21.60)
>DroAna_CAF1 116972 109 - 1
GG-CAAAAAUUACAAGUCCCGGGGUCCUCCGCCC----AUCCCAGU------GACCCUGCAUGAGCUAUGCGCACGCAUAAACAAUAAAUAAGGCUUCAUAAUUUUCCUUCAUUGAACUU
((-..(((((((.(((((.(((((((((......----.....)).------))))))).......(((((....)))))............)))))..)))))))))............ ( -22.10)
>DroPer_CAF1 60755 96 - 1
GAGCCAAAAUUACAUGGCCU---------U---------UC----UCUGC--AGCUCUGCAAGAGCUAUGCGCACGCAUAAACAAUAAAUAAGGCUUCAUAAUUUUCCUUCAUUGAACUU
(((..(((((((...(((((---------(---------.(----(((((--(....))).)))).(((((....)))))..........))))))...)))))))..)))......... ( -23.70)
>consensus
GGACAAAAAUUACAAGUCCU____UCCACUUCCA____CUCCCGGUCUGA__AGCUCUCCAUGAGCUAUGCGCACGCAUAAACAAUAAAUAAGGCUUCAUAAUUUUCCUUCAUUGAACUU
(((..(((((((.(((.(((.................................((((.....))))(((((....)))))...........))))))..)))))))..)))......... (-12.67 = -13.62 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:45 2006