Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,662,575 – 13,662,677 |
Length | 102 |
Max. P | 0.570180 |
Location | 13,662,575 – 13,662,677 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 74.92 |
Mean single sequence MFE | -28.30 |
Consensus MFE | -10.94 |
Energy contribution | -12.72 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.23 |
Mean z-score | -2.04 |
Structure conservation index | 0.39 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570180 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13662575 102 + 23771897 GCAUCAAUGAUUUAUUGCACACUUUUAGGCAGCCUAA---------GAAGAG---CAAAGUUCUUCCUUUUCCGAC----GGACCCUUUUGGCUGCCUUAAAAGCC-UAGGCCCUUCAA (((..((....))..)))...(((((((((((((...---------((((((---(...)))))))....(((...----))).......))))))).))))))..-............ ( -27.80) >DroSec_CAF1 70022 102 + 1 GCAUCAAUGAUUUAUUGCACACUUUUAGGCAGCCGAA---------CAAGAG---CAAAGUUCUUCCUUUUCCGAC----GGAUCCUUUUGGCUGCCUUAAAAGCC-UAGGCCCUUCAA (((..((....))..)))...((((((((((((((((---------.(((((---(...)))))).....(((...----)))....)))))))))).))))))..-............ ( -27.00) >DroSim_CAF1 80317 102 + 1 GCAUCAAUGAUUUAUUACACACUUUUAGGCAGCCGAA---------CAAGAG---CAAUGUUCUUCCUUUUCCGAC----GGAUCCUUUUGGCUGCCUUAAAAGCC-UAGGCCCUUCAA .......(((...........((((((((((((((((---------.(((((---(...)))))).....(((...----)))....)))))))))).))))))..-........))). ( -25.50) >DroEre_CAF1 75159 102 + 1 GCAUCAAUGAUUUAUUGCACACUUUUAGGCAGCAGAA---------CAAGAG---CCAACUUCUUCCUUUGCCGAC----AGGUCCUUUUGGCUGCCUUAAAAGCC-UAGGCUCUUCAA (((..((....))..))).........(((((..(((---------.(((..---....))).)))..)))))((.----((..(((...((((........))))-.)))..)))).. ( -24.00) >DroYak_CAF1 78353 87 + 1 GCAUCAAUGAUUUAUUGC---------------AGAA---------CAAGCG---CAAACUUCUUCCUUUUGCAAU----GCCUUCUUUUGGCUGCCUUAAAAGCC-UAGGCUCUUCCA .............(((((---------------((((---------.(((..---....))).)))....))))))----((((......((((........))))-.))))....... ( -16.80) >DroAna_CAF1 113057 119 + 1 GCAUCAAUGAUUUAUUGCAAACUUUUAGGCAGCCAGGCUCUUCCAGCCAGGCCAGAGGAGCUCUGCCUGCCUAGGCGUCUGGUUCGGUUCGGAUGCCUUGAGAGCCCUGGGCCUUACAC (((..((....))..))).......(((((((.((((((((((..((...))..))))))).))).)))))))(((((((((......))))))))).((((.(((...)))))))... ( -48.70) >consensus GCAUCAAUGAUUUAUUGCACACUUUUAGGCAGCCGAA_________CAAGAG___CAAAGUUCUUCCUUUUCCGAC____GGAUCCUUUUGGCUGCCUUAAAAGCC_UAGGCCCUUCAA (((..((....))..)))........(((((((((((..........(((((........)))))......((.......)).....))))))))))).....(((...)))....... (-10.94 = -12.72 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:44 2006