Locus 4910

Sequence ID 3L_DroMel_CAF1
Location 13,661,459 – 13,661,568
Length 109
Max. P 0.687866
window7749

overview

Window 9

Location 13,661,459 – 13,661,568
Length 109
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.82
Mean single sequence MFE -33.35
Consensus MFE -19.86
Energy contribution -19.75
Covariance contribution -0.11
Combinations/Pair 1.22
Mean z-score -1.55
Structure conservation index 0.60
SVM decision value 0.32
SVM RNA-class probability 0.687866
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13661459 109 + 23771897
CG---GCGACGAGGGUUGCCCAACACACACCGAAAGUUGUGAAAAGCAUAAGUUUGCAUUUUUAUGAAGUUGGCUAACCAUAUGCUGCCUGUGCAGUGGCGUU-------GG-UUUUGUG
.(---(((((....))))))((((.((((.(....).))))....(((......)))...........))))((.(((((.((((..(.......)..)))))-------))-))..)). ( -34.80)
>DroPse_CAF1 54750 112 + 1
CA---UAGACGAGGGUUGGCCAA---ACACCAAAAGUUGUGAAAAGCAUAAGUUUGCAUUUUUAUGAAGUUGGCUAACCAUAUGGCACAU--GCAGCAGGACCAGGAGCAGGAGAAGGAG
..---........((((((((((---..........(..(((((((((......))).))))))..)..))))))))))...(((..(..--......)..)))................ ( -25.70)
>DroEre_CAF1 74020 109 + 1
CG---GCGACGAGGGUUGGCCAACACACACCGAAAGUUGUGAGCAGCAUAAGUUUGCAUUUUUAUGAAGUUGGCUAACCAUAUGCUGCCUGUGCACUGGCAUU-------GC-UCUUGUG
..---...((((((((((((((((.((((.(....).))))....(((......)))...........)))))))))))....((((((........))))..-------))-.))))). ( -40.90)
>DroYak_CAF1 77183 112 + 1
CGAGGGCGACGAGGGUUGGCCAACACACACCGAAAGUUGUGAAAAGCAUAAGUUUGCAUUUUUAUGAAGUUGGCUAACCAUAUGCUGCCCGUGCAGUGGCGUU-------GG-UUUUGUG
(((((.(((((..(((((((((((.((((.(....).))))....(((......)))...........)))))))))))....(((((....)))))..))))-------).-))))).. ( -45.10)
>DroAna_CAF1 111865 106 + 1
CG---GCGGCGGGGGUUGG-AAAGGCACUCCGAAAGUUGAGGAGAGCAUAAGUUUGCAUUUUUAUGAAGUUUGUUAACCAUAUGGUACGUAAGCAGAGGGGUG-------GC-CACCG--
((---(.(((.....((..-..)).((((((......((((((..(((......))).))))))....(((((...(((....)))...)))))...))))))-------))-).)))-- ( -27.90)
>DroPer_CAF1 55993 112 + 1
CA---UAGACGAGGGUUGGCCAA---ACACCAAAAGUUGUGAAAAGCAUAAGUUUGCAUUUUUAUGAAGUUGGCUAACCAUAUGGCACAU--GCAGCAGGACCAGGAGCAGGAGAAGGAG
..---........((((((((((---..........(..(((((((((......))).))))))..)..))))))))))...(((..(..--......)..)))................ ( -25.70)
>consensus
CG___GCGACGAGGGUUGGCCAACACACACCGAAAGUUGUGAAAAGCAUAAGUUUGCAUUUUUAUGAAGUUGGCUAACCAUAUGCUACCUGUGCAGUGGCAUU_______GG_UAUUGUG
.............((((((((((.......(....)((((((((((((......))).)))))))))..))))))))))......................................... (-19.86 = -19.75 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:43 2006