| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,659,517 – 13,659,620 |
| Length | 103 |
| Max. P | 0.749719 |
| Location | 13,659,517 – 13,659,620 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 80.69 |
| Mean single sequence MFE | -20.15 |
| Consensus MFE | -14.84 |
| Energy contribution | -15.62 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749719 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13659517 103 - 23771897 UCUUUU--------UCCCUCGCAAGCCACCACUUUUCCAGGCCAAGAAAACAUUUGUUUUGUUUAUGGCCGUCUCAUAUAGAACAAGGCUUGAGCUUCUAUUUUCCACCCA- ......--------.......((((((............((((((.(((((....))))).)...)))))((.((.....))))..))))))...................- ( -21.30) >DroSec_CAF1 66981 103 - 1 UCCUUU--------UCCCUCGCAAGCCCCCACUUUUCCAGGCGAAGAAAACAUUUGUUUUGUUUAUGGCCGUCUCAUAUAGAACAAGGCUUGAGCUUCUAUUUUCCACCCA- ......--------.......((((((............((((((.(((((....))))).)))...)))((.((.....))))..))))))...................- ( -17.70) >DroSim_CAF1 77265 103 - 1 UCCUUU--------UCCCUCGCAAGCCACCACUUUUCCAGGCCAAGAAAACAUUUGUUUUGUUUAUGGCCGUCUCAUAUAGAACAAGGCUUGAGCUUCUAUUUUCCACCCA- ......--------.......((((((............((((((.(((((....))))).)...)))))((.((.....))))..))))))...................- ( -21.30) >DroEre_CAF1 72054 111 - 1 UUUUUUUUUUUUGUGCCCUCGCAAGCCACCACUUUUGCAGGCCAAGAAAACAUUUGUUUUGUUUAUGGCCGUCUCAUAUAGAACAAGGCUUGAGCUUCUAUUUGCCACCCA- ............(((......((((((............((((((.(((((....))))).)...)))))((.((.....))))..)))))).((........)))))...- ( -23.30) >DroYak_CAF1 75210 106 - 1 -----UUUUUUUUCCCCCUUGCAAGCCACCACUUUUCCAGGCCAAGAAAACAUUUGUUUUGUUUAUGGCCGUCUCAUAUAGAACAAGGCUUGAGCUUCUAUUUUCCACCCA- -----................((((((............((((((.(((((....))))).)...)))))((.((.....))))..))))))...................- ( -21.30) >DroAna_CAF1 109600 103 - 1 UUUAUA-----UCCCCCCCUAAUAGCCAUCAAAUUU-CGGGCUAAGAAAACAUUUGCUUUGUUUAUGGUUUCCCCACAUAGAA---UGCCUCAACUUUCACUUUCGAGGCCG ......-----.......(((.(((((.........-..))))).((((.(((..((...))..))).))))......)))..---.(((((.............))))).. ( -16.02) >consensus UCUUUU________UCCCUCGCAAGCCACCACUUUUCCAGGCCAAGAAAACAUUUGUUUUGUUUAUGGCCGUCUCAUAUAGAACAAGGCUUGAGCUUCUAUUUUCCACCCA_ .....................((((((............(((((...(((((.......))))).))))).(((.....)))....)))))).................... (-14.84 = -15.62 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:42 2006